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WormBase Tree Display for Gene: WBGene00052972

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Name Class

WBGene00052972SMapS_parentSequenceCrem_Contig13
IdentityVersion4
NameCGC_nameCre-vars-1From_analysisInferred_from_orthology
Sequence_nameCRE05468
Molecular_nameCRE05468
CRE05468.1
RP40963
Other_namecr01.sctg1.wum.834
Cre-vrs-1From_analysisInferred_from_orthology
Public_nameCre-vars-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-vrs-1
303 Jul 2008 11:44:39WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE05468
Other_namecr01.sctg1.wum.834
429 Jan 2010 10:38:19WBPerson2970Name_changeCGC_nameCre-vars-1
Other_nameCre-vrs-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvars
RNASeq_FPKMWBls:000000411.7505From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
12.8085From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
13.8665From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:000002410.3446From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
10.4251From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
10.7764From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
10.8136From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
14.108From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
14.944From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
15.3395From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
16.5209From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
16.7442From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
18.584From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
19.5723From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
20.0998From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
24.8975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
2.49476From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
2.56152From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
2.86897From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
2.94963From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
2.99777From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
3.01552From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
3.09602From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
3.43746From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
3.55343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
3.61114From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
3.82383From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
3.91242From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
4.05875From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
4.09788From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
4.28567From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
4.28809From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
4.37371From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
4.42816From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
4.53208From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
4.60124From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
4.61437From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
4.61876From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
4.6559From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
4.96502From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
5.23152From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
5.28743From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
5.39644From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
5.55457From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
5.60613From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
5.75709From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
5.76846From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
6.22571From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
6.54224From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
6.58452From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
6.79053From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
6.87188From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
7.25294From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
8.0331From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
8.89851From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
9.50858From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
WBls:00000270.872092From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
11.0501From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
11.2183From_analysisRNASeq.remanei.WBls:0000027.control_median
11.3864From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
11.7455From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
8.76352From_analysisRNASeq.remanei.WBls:0000027.control_mean
WBls:00000380.824191From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
10.0938From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
6.40311From_analysisRNASeq.remanei.WBls:0000038.control_mean
8.29135From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
WBls:000004110.0199From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
10.1611From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
10.4211From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
13.3408From_analysisRNASeq.remanei.WBls:0000041.control_median
13.5847From_analysisRNASeq.remanei.WBls:0000041.control_mean
16.2606From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
16.6776From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
17.9678From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:00000632.69321From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
3.56498From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
4.12392From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
4.51881From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
5.5026From_analysisRNASeq.remanei.WBls:0000063.control_mean
5.54362From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
5.86621From_analysisRNASeq.remanei.WBls:0000063.control_median
6.1888From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
6.50066From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
6.56187From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
7.09731From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
8.23282From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
WBls:00001018.26208From_analysisRNASeq.remanei.total_over_all_stages.control_median
8.32364From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00148175
00148176
00148177
00148178
00148179
00148180
00148181
OrthologWBGene00006935Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00006936Caenorhabditis elegansFrom_analysisTreeFam
WBGene00032507Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00146015Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00139683Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00120928Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00144282Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00137466Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00243912Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00118651Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g458Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10877Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g12754Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8653Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4350Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9365Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8159Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6809Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7212Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8211Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9774Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7578Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00997.g15293Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00997.g15294Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vars-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold615.g6005Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00553.g12779Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03666Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018737Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06097Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50099800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14885Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00061206Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00078956Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00059220Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00060840Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00062438Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00062609Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00071135Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00071140Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00073171Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00073575Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00074086Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00074087Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00075234Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00080505Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00081121Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; aminoacyl-tRNA editing activity; and valine-tRNA ligase activity. Predicted to be involved in valyl-tRNA aminoacylation. Is an ortholog of C. elegans vars-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE05468
Corresponding_transcriptCRE05468.1
Other_sequenceCBC03237_1
JI172750.1
JO470534.1
Oden_isotig22698
HGC01791_1
HG01487
JI165805.1
CBC03922_1
ACC26964_1
JO470971.1
EY468457.1
Acan_isotig09831
AE03969
JI165970.1
AYC02799_1
Experimental_infoExpr_patternExpr1104715
Microarray_resultsGPL14146_CRE05468_1967-2026_0.881_40_C
GPL14146_CRE05468_2281-2340_0.917_13_B
GPL14146_CRE05468_2492-2551_0.946_1_A
MethodGene