WormBase Tree Display for Gene: WBGene00118651

WBGene00118651 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 6
    Name: CGC_name: Ppa-vars-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA29097
      Molecular_name: PPA29097
        PPA29097.1
        PP74033
      Other_name: GENEPREDICTION_SNAP300000085884
        UMM-S2844-17.29 Person_evidence: WBPerson606
      Public_name: Ppa-vars-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:07 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-vars-1
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Ppa-vars-1
        5 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-vars-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vars
    RNASeq_FPKM: WBls:0000032 0.773139 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.773139 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        1.17073 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        2.73905 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00186412
      00186413
      00186414
      00186415
      00186416
      00186417
      00186418
      00186419
    Ortholog (30)
    Paralog: WBGene00091800 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00114535 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00118197 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272260 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276994 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00282579 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00304902 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00306061 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity; catalytic activity, acting on a tRNA; and glycosyltransferase activity. Predicted to be involved in valyl-tRNA aminoacylation. Is an ortholog of C. elegans vars-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA29097
    Corresponding_transcript: PPA29097.1
    Other_sequence (11)
  Experimental_info: Microarray_results: GPL14372_Probes_31199
      GPL14372_Probes_31200
      GPL14372_Probes_31201
      GPL14372_Probes_31202
      GPL14372_Probes_31203
      GPL14372_Probes_88228
    Expression_cluster: WBPaper00041466:PP_germline-ablation_regulated
  Remark: [190208 pad] The CGC name Ppa-vars-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-vars-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene