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WormBase Tree Display for Gene: WBGene00055584

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Name Class

WBGene00055584SMapS_parentSequenceCrem_Contig12
IdentityVersion9
NameCGC_nameCre-polq-1.1From_analysisInferred_from_orthology
Sequence_nameCRE04522
Molecular_nameCRE04522
CRE04522.1
RP40733
Other_namecr01.sctg5.wum.300
Public_nameCre-polq-1.1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:57WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE04522
Other_namecr01.sctg5.wum.300
320 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCre-polq-1.1
408 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
508 May 2019 10:09:27WBPerson1983Name_changeCGC_nameCre-polq-1.1
601 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameRemoved
704 Jun 2020 14:38:21WBPerson1983Name_changeCGC_nameCre-polq-1.1
828 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
928 Jul 2021 11:12:29WBPerson1983Name_changeCGC_nameCre-polq-1.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpolq
RNASeq_FPKMWBls:00000048.55975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
8.85966From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
9.15956From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:00000240.162417From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
0.349711From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
0.367994From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
0.504258From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
0.521844From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
0.537467From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
0.555537From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
0.729898From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
0.771328From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
0.820347From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
0.822231From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
0.930583From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
0.963301From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
1.00521From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
1.01975From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
1.15415From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
1.17599From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
1.18083From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
1.19325From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
1.21919From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
1.27261From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
1.27648From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
1.4223From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
1.43845From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
1.45899From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
1.45902From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
1.46296From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
1.4931From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
1.51841From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
1.51879From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
1.53767From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
1.55244From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
1.58226From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
1.63006From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
1.71974From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
2.09788From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
2.33419From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
2.42737From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
3.1405From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
3.71878From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
3.80451From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
3.84763From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
4.0304From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
4.61862From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
5.12457From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
5.13906From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
5.426From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
6.15From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
6.6167From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
7.40622From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
9.18441From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
9.62226From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
WBls:00000270.163749From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
3.55993From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
3.70023From_analysisRNASeq.remanei.WBls:0000027.control_mean
4.46238From_analysisRNASeq.remanei.WBls:0000027.control_median
5.36483From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
5.71242From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:00000381.99629From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
2.32132From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
RNASeq.remanei.WBls:0000038.control_median
2.36254From_analysisRNASeq.remanei.WBls:0000038.control_mean
2.77002From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:000004113.0686From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
13.7722From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
16.6143From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
4.41806From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
5.91747From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
6.03885From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
9.55373From_analysisRNASeq.remanei.WBls:0000041.control_median
9.97158From_analysisRNASeq.remanei.WBls:0000041.control_mean
WBls:00000630.541375From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
1.6368From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
2.01562From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
2.5141From_analysisRNASeq.remanei.WBls:0000063.control_mean
2.65783From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
2.75563From_analysisRNASeq.remanei.WBls:0000063.control_median
2.85343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
2.914From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
3.59625From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
4.28123From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
4.64441From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
WBls:00001013.57809From_analysisRNASeq.remanei.total_over_all_stages.control_median
4.79147From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00151055
00151056
OrthologWBGene00030747Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00147313Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00249823Brugia malayiFrom_analysisWormBase-Compara
WBGene00020964Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00132433Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244489Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00115079Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g4099Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1225Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5048Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9717Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15117Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20245Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16002Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1724Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11611Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19720Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8766Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21851Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00026.g1590Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g9312Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold444.g1239Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00254.g8041Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19822Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010629Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08142Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30138900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7794Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00299717Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00055548Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00055586Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00059583Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00062538Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00062663Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00064897Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00065562Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00076409Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00077051Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00055588Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and nucleic acid binding activity. Is an ortholog of C. elegans polq-1. In C. elegans, polq-1 is involved in base-excision repair, gap-filling and cellular response to ionizing radiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE04522
Corresponding_transcriptCRE04522.1
Other_sequenceMA00872
Dviv_isotig29890
JI175405.1
Experimental_infoExpr_patternExpr1115368
Microarray_resultsGPL14146_CRE04522_977-1036_0.951_2_A
Remark[190208 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[191001 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene