WormBase Tree Display for Gene: WBGene00115079
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| WBGene00115079 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-polq-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA25525 | ||||||||
| Molecular_name | PPA25525 | ||||||||
| PPA25525.1 | |||||||||
| PP64725 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000082380 | ||||||||
| UMS-S442-1.49 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-polq-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-polq-1 | ||||
| 3 | 18 Nov 2011 16:33:15 | WBPerson2970 | Name_change | CGC_name | Removed | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-polq-1 | ||||
| 5 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-polq-1 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-polq-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | polq | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.46571 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.727945 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 1.06455 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00184882 | ||||||||
| 00184883 | |||||||||
| 00184884 | |||||||||
| 00184885 | |||||||||
| 00184886 | |||||||||
| 00184887 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00092301 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00099643 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00104976 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00116685 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00117908 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00276775 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; DNA binding activity; and DNA-directed DNA polymerase activity. Predicted to be involved in DNA-templated DNA replication. Is an ortholog of C. elegans polq-1. In C. elegans, polq-1 is involved in base-excision repair, gap-filling and cellular response to ionizing radiation. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA25525 | |||||||
| Corresponding_transcript | PPA25525.1 | ||||||||
| Other_sequence (13) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_3834 | |||||||
| GPL14372_Probes_3835 | |||||||||
| GPL14372_Probes_3836 | |||||||||
| GPL14372_Probes_42151 | |||||||||
| GPL14372_Probes_42152 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-polq-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-polq-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
