WormBase Tree Display for Gene: WBGene00055817

WBGene00055817 SMap: S_parent: Sequence: Crem_Contig12
  Identity: Version: 4
    Name: CGC_name: Cre-hpl-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE04836
      Molecular_name: CRE04836
        CRE04836.1
        RP40658
      Other_name: cr01.sctg5.wum.525
        cr01.sctg5.wum.525.2
      Public_name: Cre-hpl-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:58 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE04836
                Other_name: cr01.sctg5.wum.525
        3 03 Jul 2008 11:48:42 WBPerson4055 Event: Acquires_merge: WBGene00055818
              Name_change: Other_name: cr01.sctg5.wum.525.2
        4 04 Jul 2008 11:06:36 WBPerson4055 Name_change: CGC_name: Cre-hpl-2
      Acquires_merge: WBGene00055818
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hpl
    RNASeq_FPKM: WBls:0000004 69.7894 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        71.5191 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        73.2487 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 20.4872 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        21.7754 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        23.0637 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        25.7362 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        4.66747 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        54.7266 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 15.297 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        17.9506 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        19.3881 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        8.55215 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 31.5569 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        37.5735 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        38.3581 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        56.4723 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        59.7244 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        74.5865 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        83.8968 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        92.3748 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 26.1113 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        35.2936 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00151311
      00151312
      00151313
    Ortholog (29)
    Paralog: WBGene00070936 Caenorhabditis remanei From_analysis: TreeFam
            GeneACeDB-Compara
      WBGene00058752 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00062358 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00063985 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00071525 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00078054 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00060127 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00080595 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable methylated histone binding activity. Predicted to be involved in chromosome attachment to the nuclear envelope. Predicted to be located in nucleus. Is an ortholog of C. elegans hpl-2. In C. elegans, hpl-2 is involved in several processes, including developmental process involved in reproduction; nematode larval development; and regulation of gene expression. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE04836
    Corresponding_transcript: CRE04836.1
    Other_sequence (23)
  Experimental_info: Expr_pattern: Expr1099607
    Microarray_results: GPL14146_CRE04836_159-218_0.899_23_C
      GPL14146_CRE04836_304-363_0.906_16_A
      GPL14146_CRE04836_58-117_0.904_19_B
  Method: Gene