WormBase Tree Display for Gene: WBGene00061779

WBGene00061779 SMap: S_parent: Sequence: Crem_Contig28
  Identity: Version: 3
    Name: CGC_name: Cre-pdcd-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE20264
      Molecular_name: CRE20264
        CRE20264.1
        RP36081
      Other_name: cr01.sctg26.wum.150
      Public_name: Cre-pdcd-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:45 WBPerson2970 Name_change: CGC_name: Cre-pdcd-2
        3 03 Jul 2008 11:45:39 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE20264
                Other_name: cr01.sctg26.wum.150
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pdcd
    RNASeq_FPKM: WBls:0000004 11.9313 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        12.4649 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        12.9986 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 10.6915 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        11.4506 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        11.7333 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        11.8981 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
        12.8809 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        12.8932 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        13.3014 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        13.4048 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        13.4736 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        14.0121 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        14.3574 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        14.3578 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        14.4333 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        15.2447 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        16.3921 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        16.4015 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        17.0271 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        17.2786 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        17.8113 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        18.1336 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        18.6358 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        18.7371 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
        18.9066 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        19.6858 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        19.7661 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        19.9738 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        20.5862 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        21.0097 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        21.8907 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        21.9475 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        22.2171 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        22.7957 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        22.9127 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        23.0163 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        23.3141 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        23.7564 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        24.6325 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        25.5773 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        25.9165 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
        26.9037 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        29.9191 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
        34.0747 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        39.8154 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        41.2351 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        41.8002 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        44.6594 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        46.2581 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        46.9308 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        46.9761 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        48.0989 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        48.8646 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        50.0219 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        9.36071 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
      WBls:0000027 23.2098 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        23.702 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        26.1472 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        28.5923 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        36.4392 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        4.1056 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 14.7459 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        18.9303 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        19.0716 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        6.23587 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 18.2982 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        19.2052 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        20.1354 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        26.3671 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        26.5109 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        32.5989 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        33.6917 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        35.1357 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 16.5802 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        17.0856 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        20.8508 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        21.0624 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        21.3149 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
        21.9499 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        22.5849 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        23.4696 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        24.2658 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        24.4238 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        29.7669 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        7.95433 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
      WBls:0000101 20.3685 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        20.5989 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    GO_annotation: 00157184
    Ortholog: WBGene00011116 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00037559 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00141831 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121522 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225543 Brugia malayi From_analysis: WormBase-Compara
      WBGene00245610 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00111805 Pristionchus pacificus From_analysis: WormBase-Compara
      CBOVI.g5849 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1272 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5666 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g6384 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20529 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16773 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9744 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4932 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2426 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15212 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g2899 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18614 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00074.g3473 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pdcd-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_III.g9767 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold8.g28 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00864.g16237 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14970 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04608 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g4563 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30075000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7449 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00262793 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286954 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00082231 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Is an ortholog of C. elegans pdcd-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE20264
    Corresponding_transcript: CRE20264.1
    Other_sequence: Tcol_isotig01587
      Tcol_isotig01586
      EX544718.1
      FC544511.1
      SC01182
      Tcol_isotig01582
      HCC01142_1
      Hbac_isotig02710
      AYC01398_1
      HBC11492_1
      Acan_isotig06742
      EY471452.1
      Tcol_isotig01585
      FK809267.1
      AAC00314_1
      DN190400.1
      JI167617.1
      PSC04901_1
      CJC17808_1
      Name_isotig03499
      Oden_contig17670
      FC548464.1
      Hbac_isotig04208
      CBC03952_1
      ES740905.1
      Tcol_isotig01581
      Dviv_isotig14562
      Tcol_isotig01584
      Dviv_isotig14561
      Tcol_isotig01588
      EX551016.1
      EY459010.1
      HC03053
      EY465252.1
      ACC00051_1
      GW413504.1
      AE02942
      EY471173.1
      GR977375.1
      Tcir_isotig03316
      EX915061.1
      FK806716.1
      Tcol_isotig01583
      Dviv_isotig14560
      FC549321.1
  Experimental_info: Expr_pattern: Expr1113024
    Microarray_results: GPL14146_CRE20264_1010-1069_0.943_1_B
      GPL14146_CRE20264_222-281_0.701_97_A
      GPL14146_CRE20264_805-864_0.935_2_C
  Method: Gene