WormBase Tree Display for Gene: WBGene00063872

WBGene00063872 SMap: S_parent: Sequence: Crem_Contig126
  Identity: Version: 4
    Name: CGC_name: Cre-pdzd-8.1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE25778
      Molecular_name: CRE25778
        CRE25778.1
        RP34044
      Other_name: cr01.sctg43.wum.52
        Cre-pdzd-8 From_analysis: Inferred_from_orthology
      Public_name: Cre-pdzd-8.1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:54 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE25778
                Other_name: cr01.sctg43.wum.52
        3 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cre-pdzd-8
        4 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cre-pdzd-8.1
                Other_name: Cre-pdzd-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pdzd
    RNASeq_FPKM: WBls:0000004 15.7876 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        16.3497 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        16.9118 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 11.3135 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        11.5102 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        11.7069 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        12.479 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        1.40323 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        9.22566 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
      WBls:0000038 2.24183 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        5.80852 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        6.87637 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        8.30737 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 20.7548 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        25.6987 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        26.6009 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        31.8865 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        32.5132 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        38.4256 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        38.6246 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        41.2146 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 12.5999 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        7.26289 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    GO_annotation: 00159249
      00159250
      00159251
    Ortholog (46)
    Paralog: WBGene00076171 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00073520 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00085887 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to be involved in mitochondrial calcium ion homeostasis and mitochondrion-endoplasmic reticulum membrane tethering. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Is an ortholog of C. elegans pdzd-8. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE25778
    Corresponding_transcript: CRE25778.1
    Other_sequence: ACC29592_1
      CR04805
      JI483073.1
      CRC08562_1
      Dviv_isotig27124
      Dviv_isotig05869
      EX549561.1
      EX547759.1
  Method: Gene