WormBase Tree Display for Gene: WBGene00090382
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| WBGene00090382 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-smg-6 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA00828 | ||||||||
| Molecular_name | PPA00828 | ||||||||
| PPA00828.1 | |||||||||
| PP71424 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000067553 | ||||||||
| UMM-S50-27.24 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-smg-6 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-smg-6 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-smg-6 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-smg-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 1.67911 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.00034 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 1.32191 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00173443 | ||||||||
| 00173444 | |||||||||
| 00173445 | |||||||||
| 00173446 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and catalytic activity. Predicted to be involved in base-excision repair. Is an ortholog of C. elegans smg-6. In C. elegans, smg-6 is involved in embryonic genitalia morphogenesis; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and regulatory ncRNA-mediated post-transcriptional gene silencing. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA00828 | |||||||
| Corresponding_transcript | PPA00828.1 | ||||||||
| Other_sequence (30) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_15144 | |||||||
| GPL14372_Probes_15145 | |||||||||
| GPL14372_Probes_15146 | |||||||||
| GPL14372_Probes_62112 | |||||||||
| GPL14372_Probes_62113 | |||||||||
| GPL14372_Probes_62114 | |||||||||
| GPL14372_Probes_62116 | |||||||||
| GPL14372_Probes_62119 | |||||||||
| GPL14372_Probes_62120 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-smg-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-smg-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
