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WormBase Tree Display for Gene: WBGene00090764

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Name Class

WBGene00090764SMapS_parentSequencePPA_ChrV
IdentityVersion2
NameCGC_namePpa-syx-3.2From_analysisInferred_from_orthology
Sequence_namePPA01210
Molecular_namePPA01210
PPA01210.1
PP68022
Other_nameGENEPREDICTION_SNAP300000058928
UMM-S2868-24.6Person_evidenceWBPerson606
Public_namePpa-syx-3.2
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:03WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_namePpa-syx-3.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyx
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010115.3535From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
5.11783From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
GO_annotation00173637
00173638
OrthologWBGene00006371Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00030474Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00035094Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00051691Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00060825Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00158857Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00124669Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00137450Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00152874Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156518Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00224085Brugia malayiFrom_analysisWormBase-Compara
WBGene00006374Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242557Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g10728Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g3491Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5697Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18225Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g19048Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10531Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g3935Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2504Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4120Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9058Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g120Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g3549Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1047Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g10890Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21633Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g2312Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23567Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17670Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g4666Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00116.g4804Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00238.g7633Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-syx-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cni-syx-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold527.g3086Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold574.g4356Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00012.g793Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00271.g8403Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00524Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_09195Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001522Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_024411Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11360Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9471Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10038000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0240510Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11082Caenorhabditis elegansFrom_analysisWormBase-Compara
chrX_pilon.g19061Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00262813Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00105441Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00274995Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278566Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281849Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304493Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-3. In C. elegans, syx-3 is involved in positive regulation of defecation and regulation of muscle contraction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA01210
Corresponding_transcriptPPA01210.1
Experimental_infoMicroarray_resultsGPL14372_Probes_59550
GPL14372_Probes_59551
GPL14372_Probes_59552
MethodGene