WormBase Tree Display for Gene: WBGene00092102
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| WBGene00092102 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-gcn-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA02548 | ||||||||
| Molecular_name | PPA02548 | ||||||||
| PPA02548.1 | |||||||||
| PP52662 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000060209 | ||||||||
| GENEPREDICTION_SNAP300000060210 | |||||||||
| UMM-S50-4.43 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-gcn-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-gcn-1 | ||||
| 3 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00092103 | ||||
| 4 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-gcn-1 | ||||
| 6 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-gcn-1 | ||||
| Acquires_merge | WBGene00092103 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gcn | ||||||||
| RNASeq_FPKM | WBls:0000032 | 12.1595 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 5.74361 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 5.9677 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00114231 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: TOG domain; Armadillo-type fold; Armadillo-like helical; HEAT repeat; and Translational activator Gcn1. Is an ortholog of C. elegans gcn-1. In C. elegans, gcn-1 is involved in positive regulation of peptidyl-serine phosphorylation; regulation of apoptotic process; and regulation of translation. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA02548 | |||||||
| Corresponding_transcript | PPA02548.1 | ||||||||
| Other_sequence (59) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_3723 | |||||||
| GPL14372_Probes_3724 | |||||||||
| GPL14372_Probes_3725 | |||||||||
| GPL14372_Probes_3726 | |||||||||
| GPL14372_Probes_3727 | |||||||||
| GPL14372_Probes_3728 | |||||||||
| GPL14372_Probes_3729 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-gcn-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-gcn-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
