WormBase Tree Display for Gene: WBGene00092862
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| WBGene00092862 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-ocr-4 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA03308 | ||||||||
| Molecular_name | PPA03308 | ||||||||
| PPA03308.1 | |||||||||
| PP55776 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000059651 | ||||||||
| GENEPREDICTION_SNAP300000059657 | |||||||||
| UMM-S283-5.69 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ocr-4 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00092868 | ||||
| 3 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-ocr-4 | ||||
| 4 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-ocr-4 | ||||
| 6 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ocr-4 | ||||
| Acquires_merge | WBGene00092868 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ocr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 21.2393 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 10.7955 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 11.1473 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00174761 | ||||||||
| 00174762 | |||||||||
| 00174763 | |||||||||
| 00174764 | |||||||||
| 00174765 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00091769 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00096407 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00108284 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273152 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00276990 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable monoatomic ion channel activity. Predicted to be involved in monoatomic ion transport; protein targeting to vacuole; and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans ocr-4. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA03308 | |||||||
| Corresponding_transcript | PPA03308.1 | ||||||||
| Other_sequence (20) | |||||||||
| Experimental_info | Microarray_results (17) | ||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-ocr-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-ocr-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
