WormBase Tree Display for Gene: WBGene00096023
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| WBGene00096023 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | Ppa-spr-5 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA06469 | ||||||||
| Molecular_name | PPA06469 | ||||||||
| PPA06469.1 | |||||||||
| PP60486 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000062835 | ||||||||
| GENEPREDICTION_SNAP300000062836 | |||||||||
| UMM-S554-0.9 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-spr-5 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00096024 | ||||
| 3 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-spr-5 | ||||
| Acquires_merge | WBGene00096024 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 10.2012 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 10.2012 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 22.5865 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 57.5584 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00176237 | ||||||||
| 00176238 | |||||||||
| 00176239 | |||||||||
| 00176240 | |||||||||
| Ortholog (46) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Predicted to enable oxidoreductase activity and translation initiation factor activity. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is an ortholog of C. elegans spr-5. In C. elegans, spr-5 is involved in epigenetic regulation of gene expression. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA06469 | |||||||
| Corresponding_transcript | PPA06469.1 | ||||||||
| Other_sequence (11) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_37343 | |||||||
| GPL14372_Probes_37345 | |||||||||
| GPL14372_Probes_37346 | |||||||||
| GPL14372_Probes_37347 | |||||||||
| GPL14372_Probes_37348 | |||||||||
| GPL14372_Probes_37349 | |||||||||
| GPL14372_Probes_37350 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [171116 mh6] the name Ppa-slc-25A46 needs to be double checked before it can be blessed into a CGC name | Curator_confirmed | WBPerson4055 | ||||||
| Method | Gene |
