WormBase Tree Display for Gene: WBGene00096430
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| WBGene00096430 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-sir-2.4 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA06876 | ||||||||
| Molecular_name | PPA06876 | ||||||||
| PPA06876.1 | |||||||||
| PP62841 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000064263 | ||||||||
| UMM-S66-8.34 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-sir-2.4 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Ppa-sir-2.4.1 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-sir-2.4 | ||||
| 5 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-sir-2.4.1 | ||||
| Other_name | Ppa-sir-2.4 | ||||||||
| 6 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-sir-2.4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sir | ||||||||
| RNASeq_FPKM | WBls:0000032 | 36.6576 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 35.4338 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 36.6576 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 69.6437 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00176444 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00107074 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00108481 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00272727 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273891 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable NAD+ binding activity. Is an ortholog of C. elegans sir-2.4. In C. elegans, sir-2.4 is involved in P granule assembly and response to heat. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA06876 | |||||||
| Corresponding_transcript | PPA06876.1 | ||||||||
| Other_sequence (70) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_64903 | |||||||
| GPL14372_Probes_67302 | |||||||||
| GPL14372_Probes_67303 | |||||||||
| GPL14372_Probes_67304 | |||||||||
| GPL14372_Probes_67311 | |||||||||
| GPL14372_Probes_67312 | |||||||||
| GPL14372_Probes_67313 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-sir-2.4.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-sir-2.4.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Removed duplicate Other_name Ppa-sir-2.4 | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
