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WormBase Tree Display for Gene: WBGene00097987

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Name Class

WBGene00097987SMapS_parentSequencePPA_ChrI
IdentityVersion9
NameCGC_namePpa-tyms-1From_analysisInferred_from_orthology
Sequence_namePPA08433
Molecular_namePPA08433
PPA08433.1
PP68604
Other_nameGENEPREDICTION_SNAP300000064913
GENEPREDICTION_SNAP300000064915
UMM-S139-10.8Person_evidenceWBPerson606
Public_namePpa-tyms-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-tbc-7
324 Nov 2017 09:46:49WBPerson4055EventAcquires_mergeWBGene00097989
424 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00204002
524 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00204089
608 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
708 May 2019 10:09:25WBPerson1983Name_changeCGC_namePpa-tbc-7
828 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
928 Jul 2021 11:12:26WBPerson1983Name_changeCGC_namePpa-tyms-1
Acquires_mergeWBGene00097989
WBGene00204002
WBGene00204089
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtyms
RNASeq_FPKMWBls:00000328.89384From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001016.11551From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
8.89384From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
9.45269From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00177182
00177183
Ortholog (29)
ParalogWBGene00099425Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110364Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274181Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable thymidylate synthase activity. Predicted to be involved in dTMP biosynthetic process. Is an ortholog of C. elegans tyms-1. In C. elegans, tyms-1 is involved in dTMP biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA08433
Corresponding_transcriptPPA08433.1
Other_sequence (54)
Experimental_infoMicroarray_resultsGPL14372_Probes_31096
GPL14372_Probes_31097
GPL14372_Probes_31100
GPL14372_Probes_88078
GPL14372_Probes_88080
GPL14372_Probes_88081
GPL14372_Probes_88082
GPL14372_Probes_88083
GPL14372_Probes_88085
Expression_clusterWBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
Remark[190208 pad] The CGC name Ppa-tbc-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-tbc-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene