WormBase Tree Display for Gene: WBGene00102629
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| WBGene00102629 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-odc-1.2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA13075 | ||||||||
| Molecular_name | PPA13075 | ||||||||
| PPA13075.1 | |||||||||
| PP53594 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000069921 | ||||||||
| UMM-S2844-2.51 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-odc-1.2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-odc-1.3 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-odc-1.3 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-odc-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.986863 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 2.96059 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00179161 | ||||||||
| 00179162 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00105040 | Pristionchus pacificus | From_analysis | Inparanoid_7 | |||||
| WormBase-Compara | |||||||||
| WBGene00098804 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00115952 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00280493 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. Is an ortholog of C. elegans odc-1. In C. elegans, odc-1 is involved in putrescine biosynthetic process from ornithine. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA13075 | |||||||
| Corresponding_transcript | PPA13075.1 | ||||||||
| Other_sequence | JI168658.1 | ||||||||
| JO468885.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_40427 | |||||||
| GPL14372_Probes_40428 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-odc-1.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-odc-1.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
