WormBase Tree Display for Gene: WBGene00103360
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| WBGene00103360 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | Ppa-skr-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA13806 | ||||||||
| Molecular_name | PPA13806 | ||||||||
| PPA13806.1 | |||||||||
| PP20813 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000070310 | ||||||||
| UMM-S2838-34.7 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-skr-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-skr-3 | ||||
| 3 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-skr-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 69.6364 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 126.814 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 310.807 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 69.6364 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| GO_annotation | 00179375 | ||||||||
| Ortholog (72) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans skr-3. In C. elegans, skr-3 is involved in defense response to Gram-negative bacterium and innate immune response. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA13806 | |||||||
| Corresponding_transcript | PPA13806.1 | ||||||||
| Other_sequence | CBC08783_1 | ||||||||
| AE00159 | |||||||||
| FG584870.1 | |||||||||
| PPC07897_1 | |||||||||
| CBC05817_1 | |||||||||
| AYC03769_1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_20980 | |||||||
| GPL14372_Probes_20981 | |||||||||
| GPL14372_Probes_20982 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [191001 pad] The CGC name Ppa-skr-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
