WormBase Tree Display for Gene: WBGene00104799

WBGene00104799 SMap: S_parent: Sequence: PPA_ChrIII
  Identity: Version: 4
    Name: CGC_name: Ppa-col-85 From_analysis: Inferred_from_orthology
      Sequence_name: PPA15245
      Molecular_name: PPA15245
        PPA15245.1
        PP63212
      Other_name: GENEPREDICTION_SNAP300000074941
        UMM-S66-19.65 Person_evidence: WBPerson606
      Public_name: Ppa-col-85
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 08 Feb 2019 15:42:26 WBPerson1983 Name_change: CGC_name: Ppa-col-85
        3 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Removed
        4 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Ppa-col-85
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    RNASeq_FPKM: WBls:0000032 0.813447 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.591355 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0.813447 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        0.960618 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00180037
      00180038
      00180039
      00180040
      00180041
    Ortholog (41)
    Paralog: WBGene00104628 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00104629 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00104817 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00096182 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00107493 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00111090 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00115908 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00273664 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278062 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity and protein kinase activity. Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Is an ortholog of C. elegans col-85. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA15245
    Corresponding_transcript: PPA15245.1
    Other_sequence (39)
  Experimental_info: Microarray_results (15)
    Expression_cluster: WBPaper00041466:PP_germline-ablation_regulated
      WBPaper00041606:PP_S.marcescens_regulated
      WBPaper00041606:PP_X.nematophila_regulated
  Remark: [190507 pad] The CGC name Ppa-col-85 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene