WormBase Tree Display for Gene: WBGene00105313
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| WBGene00105313 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-usp-50 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA15759 | ||||||||
| Molecular_name | PPA15759 | ||||||||
| PPA15759.1 | |||||||||
| PP75161 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000072188 | ||||||||
| UMM-S469-0.28 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-usp-50 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 04 Jan 2016 15:57:05 | WBPerson2970 | Name_change | CGC_name | Ppa-usp-50 | ||||
| 3 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00203390 | ||||
| 4 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| 5 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-usp-50 | ||||
| 6 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 26 Sep 2019 11:41:30 | WBPerson4055 | Event | Split_into | WBGene00304967 | ||||
| 8 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-usp-50 | ||||
| Acquires_merge | WBGene00203390 | ||||||||
| Split_into | WBGene00304967 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | usp | ||||||||
| RNASeq_FPKM | WBls:0000032 | 8.5389 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 5.64746 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 8.40349 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00180290 | ||||||||
| 00180291 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity. Is an ortholog of C. elegans usp-50. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15759 | |||||||
| Corresponding_CDS_history | PPA15759:pp273 | ||||||||
| Corresponding_transcript | PPA15759.1 | ||||||||
| Other_sequence (11) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_6335 | |||||||
| GPL14372_Probes_48525 | |||||||||
| GPL14372_Probes_48526 | |||||||||
| GPL14372_Probes_48528 | |||||||||
| GPL14372_Probes_48529 | |||||||||
| GPL14372_Probes_48530 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [180319 gw3] The CGC name Ppa-usp-50 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | ||||||
| [190507 pad] The CGC name Ppa-usp-50 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
