WormBase Tree Display for Gene: WBGene00106878
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| WBGene00106878 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Identity | Version | 12 | ||||
| Name | Sequence_name | PPA17324 | ||||
| Molecular_name | PPA17324 | |||||
| PPA17324.1 | ||||||
| PP55837 | ||||||
| Other_name | GENEPREDICTION_SNAP300000073753 | |||||
| GENEPREDICTION_SNAP300000073754 | ||||||
| GENEPREDICTION_SNAP300000073756 | ||||||
| GENEPREDICTION_SNAP300000073757 | ||||||
| GENEPREDICTION_SNAP300000073758 | ||||||
| UMM-S413-3.11 | Person_evidence | WBPerson606 | ||||
| Public_name | PPA17324 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (12) | |||||
| Acquires_merge | WBGene00106882 | |||||
| WBGene00106879 | ||||||
| WBGene00106881 | ||||||
| WBGene00106883 | ||||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| RNASeq_FPKM | WBls:0000032 | 19.0353 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 12.9736 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
| 19.0353 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
| 19.8854 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| GO_annotation | 00180994 | |||||
| 00180995 | ||||||
| 00180996 | ||||||
| 00180997 | ||||||
| 00180998 | ||||||
| 00180999 | ||||||
| 00181000 | ||||||
| Ortholog (50) | ||||||
| Paralog | WBGene00091853 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
| WBGene00101495 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00277012 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00305185 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| Structured_description | Automated_description | Predicted to enable heterocyclic compound binding activity; oxygen binding activity; and pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Is an ortholog of C. elegans T28D6.6 and glb-11. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA17324 | ||||
| Corresponding_transcript | PPA17324.1 | |||||
| Other_sequence (149) | ||||||
| Experimental_info | Microarray_results (12) | |||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | |||||
| WBPaper00041466:PP_germline-ablation_regulated | ||||||
| WBPaper00041606:PP_X.nematophila_regulated | ||||||
| Remark | [180319 gw3] The CGC name Ppa-glb-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | |||
| [190507 pad] The CGC name Ppa-glb-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| [191127 pad] The CGC name Ppa-glb-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| [210728 pad] The CGC name Ppa-glb-11 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| Method | Gene |
