WormBase Tree Display for Gene: WBGene00106974
expand all nodes | collapse all nodes | view schema
| WBGene00106974 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | Sequence_name | PPA17420 | |||||||
| Molecular_name | PPA17420 | ||||||||
| PPA17420.1 | |||||||||
| PP38924 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074115 | ||||||||
| UMM-S207-15.81 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA17420 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-lsl-1 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-lsy-2 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.57883 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 4.73649 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00111278 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||
| WBGene00113702 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273225 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273704 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2 superfamily; Zinc finger C2H2-type; and Zinc-finger of C2H2 type. Is an ortholog of C. elegans K11D2.4; lsl-1; and lsy-2. In C. elegans, lsy-2 is involved in nematode larval development; neuron fate specification; and positive regulation of gene expression. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17420 | |||||||
| Corresponding_transcript | PPA17420.1 | ||||||||
| Other_sequence | PPC15191_1 | ||||||||
| CRC00721_1 | |||||||||
| CR00089 | |||||||||
| EX538076.1 | |||||||||
| CR00096 | |||||||||
| EX565327.1 | |||||||||
| CR00139 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_72718 | |||||||
| GPL14372_Probes_72719 | |||||||||
| GPL14372_Probes_72720 | |||||||||
| GPL14372_Probes_72721 | |||||||||
| GPL14372_Probes_72722 | |||||||||
| GPL14372_Probes_72724 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-lsl-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lsy-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
