WormBase Tree Display for Gene: WBGene00108055
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WBGene00108055 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Identity | Version | 9 | ||||
Name | CGC_name | Ppa-stc-1 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA18501 | |||||
Molecular_name | PPA18501 | |||||
PPA18501.1 | ||||||
PP64068 | ||||||
Other_name | GENEPREDICTION_SNAP300000075323 | |||||
UMM-S245-13.2 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-stc-1 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (9) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | stc | |||||
RNASeq_FPKM | WBls:0000032 | 0.825928 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 0.825928 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||
1.90091 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||
4.87679 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00181578 | |||||
00181579 | ||||||
00181580 | ||||||
00181581 | ||||||
Ortholog (33) | ||||||
Paralog (20) | ||||||
Structured_description | Automated_description | Predicted to enable ATP binding activity and ATP-dependent protein folding chaperone. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans stc-1. In C. elegans, stc-1 is involved in IRE1-mediated unfolded protein response. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA18501 | ||||
Corresponding_transcript | PPA18501.1 | |||||
Other_sequence (65) | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_67800 | ||||
GPL14372_Probes_67801 | ||||||
GPL14372_Probes_67803 | ||||||
GPL14372_Probes_67805 | ||||||
Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | |||||
Remark | [190208 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[191127 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
[210528 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Removed duplicate Other_name Ppa-stc-1 | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |