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WormBase Tree Display for Gene: WBGene00112025

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Name Class

WBGene00112025SMapS_parentSequencePPA_ChrI
IdentityVersion1
NameCGC_namePpa-tct-1From_analysisInferred_from_orthology
Sequence_namePPA22471
Molecular_namePPA22471
PPA22471.1
PP52550
Other_nameGENEPREDICTION_SNAP300000079216
UMM-S196-10.31Person_evidenceWBPerson606
Public_namePpa-tct-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtct
RNASeq_FPKMWBls:000003252.9328From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010146.2002From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
52.9328From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
85.6678From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Ortholog (40)
ParalogWBGene00091695Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276562Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278706Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Ribosomal protein L10; Ribosomal protein L10P; Translationally controlled tumour protein; Ribosomal protein L10-like domain superfamily; 60S ribosomal protein L10P, insertion domain; 50S ribosomal protein L10, insertion domain superfamily; Mss4-like superfamily; Mss4/translationally controlled tumour-associated TCTP; 60s Acidic ribosomal protein; and Insertion domain in 60S ribosomal protein L10P. Is an ortholog of C. elegans tct-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA22471
Corresponding_transcriptPPA22471.1
Other_sequence (964)
Experimental_infoMicroarray_resultsGPL14372_Probes_51150
GPL14372_Probes_51152
GPL14372_Probes_51153
GPL14372_Probes_51154
GPL14372_Probes_51155
GPL14372_Probes_51156
GPL14372_Probes_51157
GPL14372_Probes_51158
GPL14372_Probes_51159
Expression_clusterWBPaper00041207:PP_dauer_down
WBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
WBPaper00041606:PP_X.nematophila_regulated
MethodGene