WormBase Tree Display for Gene: WBGene00115045
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| WBGene00115045 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-tpst-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA25491 | ||||||||
| Molecular_name | PPA25491 | ||||||||
| PPA25491.1 | |||||||||
| PP54847 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000082346 | ||||||||
| UMM-S442-2.100 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-tpst-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-tpst-1 | ||||
| 4 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-tpst-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tpst | ||||||||
| RNASeq_FPKM | WBls:0000032 | 9.61982 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 13.3051 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 30.2956 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 9.61982 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| GO_annotation | 00184866 | ||||||||
| 00184867 | |||||||||
| 00184868 | |||||||||
| 00184869 | |||||||||
| 00184870 | |||||||||
| Ortholog (31) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; protein kinase activity; and protein-tyrosine sulfotransferase activity. Is an ortholog of C. elegans tpst-1. In C. elegans, tpst-1 is involved in several processes, including collagen metabolic process; cuticle development involved in collagen and cuticulin-based cuticle molting cycle; and regulation of nematode larval development. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA25491 | |||||||
| Corresponding_transcript | PPA25491.1 | ||||||||
| Other_sequence (17) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_42267 | |||||||
| GPL14372_Probes_42268 | |||||||||
| GPL14372_Probes_42269 | |||||||||
| GPL14372_Probes_42270 | |||||||||
| GPL14372_Probes_42271 | |||||||||
| GPL14372_Probes_42272 | |||||||||
| GPL14372_Probes_42274 | |||||||||
| GPL14372_Probes_42275 | |||||||||
| GPL14372_Probes_42277 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-tpst-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-tpst-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
