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WormBase Tree Display for Gene: WBGene00115083

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Name Class

WBGene00115083SMapS_parentSequencePPA_ChrIII
IdentityVersion2
NameCGC_namePpa-sbsp-1From_analysisInferred_from_orthology
Sequence_namePPA25529
Molecular_namePPA25529
PPA25529.1
PP73042
Other_nameGENEPREDICTION_SNAP300000082384
UMM-S442-1.0Person_evidenceWBPerson606
Public_namePpa-sbsp-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
228 May 2021 19:05:19WBPerson1983Name_changeCGC_namePpa-sbsp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsbsp
RNASeq_FPKMWBls:000003216.3378From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010110.5918From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
15.4375From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00011269Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00037749Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00055829Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00193806Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00225657Brugia malayiFrom_analysisWormBase-Compara
WBGene00132105Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245128Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g5002Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7193Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8298Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18580Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22589Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21117Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12189Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7658Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11376Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15777Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g385Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-R17.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7286Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00257.g8110Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11467Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010392Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11648Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9946Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30111000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8946Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00259791Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285922Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Somatomedin-B and thrombospondin type-1 domain-containing protein; Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Somatomedin B domain; and Somatomedin B-like domain superfamily. Is an ortholog of C. elegans sbsp-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA25529
Corresponding_transcriptPPA25529.1
Other_sequenceFC548848.1
FC540457.1
JI173426.1
ACC14698_1
Experimental_infoMicroarray_resultsGPL14372_Probes_42147
MethodGene