WormBase Tree Display for Gene: WBGene00115888
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| WBGene00115888 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-adt-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA26334 | ||||||||
| Molecular_name | PPA26334 | ||||||||
| PPA26334.1 | |||||||||
| PP73559 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000083182 | ||||||||
| GENEPREDICTION_SNAP300000083183 | |||||||||
| UMA-S57-15.30 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-adt-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-adt-2 | ||||
| 3 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00115889 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00204984 | ||||
| 5 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-cest-19 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-adt-2 | ||||
| Acquires_merge | WBGene00115889 | ||||||||
| WBGene00204984 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | adt | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00185205 | ||||||||
| 00185206 | |||||||||
| 00185207 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00095949 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00097611 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00106995 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00110133 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00114522 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00116002 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans adt-2. In C. elegans, adt-2 is involved in several processes, including collagen fibril organization; determination of adult lifespan; and regulation of cell size. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA26334 | |||||||
| Corresponding_transcript | PPA26334.1 | ||||||||
| Other_sequence (13) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_17728 | |||||||
| GPL14372_Probes_17729 | |||||||||
| GPL14372_Probes_17731 | |||||||||
| GPL14372_Probes_17732 | |||||||||
| GPL14372_Probes_17734 | |||||||||
| GPL14372_Probes_17736 | |||||||||
| GPL14372_Probes_17737 | |||||||||
| GPL14372_Probes_17738 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-adt-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-cest-19 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
