WormBase Tree Display for Gene: WBGene00116514
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| WBGene00116514 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-smk-1.2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA26960 | ||||||||
| Molecular_name | PPA26960 | ||||||||
| PPA26960.1 | |||||||||
| PP70966 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000083781 | ||||||||
| UMS-S233-13.11 | Person_evidence | WBPerson606 | |||||||
| Ppa-smk-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-smk-1.2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-smk-1.2 | ||||
| Other_name | Ppa-smk-1 | ||||||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-smk-1 | ||||
| Other_name | Ppa-smk-1.2 | ||||||||
| 4 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-smk-1.2 | ||||
| Other_name | Ppa-smk-1 | ||||||||
| 5 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-smk-1 | ||||
| Other_name | Ppa-smk-1.2 | ||||||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-smk-1.2 | ||||
| Other_name | Ppa-smk-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smk | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| Ortholog | WBGene00018285 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WBGene00132704 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| Structured_description | Automated_description | Is an ortholog of C. elegans smk-1. In C. elegans, smk-1 is involved in several processes, including defense response to bacterium; negative regulation of mitotic DNA damage checkpoint; and response to radiation. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA26960 | |||||||
| Corresponding_transcript | PPA26960.1 | ||||||||
| Other_sequence (23) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_25776 | |||||||
| GPL14372_Probes_25777 | |||||||||
| GPL14372_Probes_25778 | |||||||||
| GPL14372_Probes_25779 | |||||||||
| GPL14372_Probes_25780 | |||||||||
| Method | Gene |
