WormBase Tree Display for Gene: WBGene00116892
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| WBGene00116892 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-pas-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA27338 | ||||||||
| Molecular_name | PPA27338 | ||||||||
| PPA27338.1 | |||||||||
| PP61948 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084159 | ||||||||
| GENEPREDICTION_SNAP300000084160 | |||||||||
| UMM-S207-22.17 | Person_evidence | WBPerson606 | |||||||
| Ppa-cope-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-pas-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Aug 2013 16:53:10 | WBPerson2970 | Name_change | CGC_name | Ppa-cope-1 | ||||
| 3 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00116893 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-pas-1 | ||||
| Other_name | Ppa-cope-1 | ||||||||
| 5 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-pas-1 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-pas-1 | ||||
| Acquires_merge | WBGene00116893 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| RNASeq_FPKM | WBls:0000032 | 95.9669 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 60.3236 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 85.0038 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00185603 | ||||||||
| 00185604 | |||||||||
| 00185605 | |||||||||
| 00185606 | |||||||||
| 00185607 | |||||||||
| 00185608 | |||||||||
| Ortholog (52) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Predicted to enable structural molecule activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum and ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome core complex, alpha-subunit complex. Is an ortholog of C. elegans pas-1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA27338 | |||||||
| Corresponding_transcript | PPA27338.1 | ||||||||
| Other_sequence (145) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_72348 | |||||||
| GPL14372_Probes_72349 | |||||||||
| GPL14372_Probes_72350 | |||||||||
| GPL14372_Probes_72351 | |||||||||
| GPL14372_Probes_72352 | |||||||||
| GPL14372_Probes_72353 | |||||||||
| GPL14372_Probes_72354 | |||||||||
| GPL14372_Probes_72355 | |||||||||
| GPL14372_Probes_72356 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-pas-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-pas-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
