WormBase Tree Display for Gene: WBGene00118820
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| WBGene00118820 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-rgr-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA29266 | ||||||||
| Molecular_name | PPA29266a | ||||||||
| PPA29266a.1 | |||||||||
| PP75642 | |||||||||
| PPA29266b | |||||||||
| PP75668 | |||||||||
| PPA29266b.1 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000085930 | ||||||||
| UMM-S207-10.40 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-rgr-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2011 16:33:16 | WBPerson2970 | Name_change | CGC_name | Removed | ||||
| 3 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-rgr-1 | ||||
| 4 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-rgr-1 | ||||
| 6 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-rgr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rgr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 6.44399 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 15.22 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 6.44399 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 7.22133 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00186491 | ||||||||
| 00186492 | |||||||||
| 00186493 | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. Is an ortholog of C. elegans rgr-1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA29266a | |||||||
| PPA29266b | |||||||||
| Corresponding_CDS_history | PPA29266:pp274 | ||||||||
| Corresponding_transcript | PPA29266a.1 | ||||||||
| PPA29266b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_72180 | |||||||
| GPL14372_Probes_72181 | |||||||||
| GPL14372_Probes_72182 | |||||||||
| GPL14372_Probes_72184 | |||||||||
| GPL14372_Probes_72185 | |||||||||
| GPL14372_Probes_72186 | |||||||||
| Expression_cluster | WBPaper00041472:Phosphorylated_protein | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-rgr-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-rgr-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
