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WormBase Tree Display for Gene: WBGene00125162

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Name Class

WBGene00125162SMapS_parentSequenceCjap.Contig17502
IdentityVersion5
NameCGC_nameCjp-nmtn-1.2From_analysisInferred_from_orthology
Sequence_nameCJA05958
Molecular_nameCJA05958
CJA05958.1
JA52216
Public_nameCjp-nmtn-1.2
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:21WBPerson4055EventImportedNGASP import
229 Jul 2011 11:13:37WBPerson4055EventImportedAugustus import
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameCjp-nmtn-1.2
408 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
528 Jul 2021 11:12:29WBPerson1983Name_changeCGC_nameCjp-nmtn-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnmtn
RNASeq_FPKMWBls:00000042.30564From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.34105From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.2347From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
1.32279From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
1.41088From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.380318From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.383797From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.5288From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.61362From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.75101From_analysisRNASeq.japonica.WBls:0000041.control_mean
1.89313From_analysisRNASeq.japonica.WBls:0000041.control_median
2.17265From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.23701From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.32468From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.36724From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
WBls:00001011.61362From_analysisRNASeq.japonica.total_over_all_stages.control_median
1.63849From_analysisRNASeq.japonica.total_over_all_stages.control_mean
OrthologWBGene00147692Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00159764Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00161943Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00033556Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225101Brugia malayiFrom_analysisWormBase-Compara
WBGene00019434Caenorhabditis elegansFrom_analysisWormBase-Compara
CBOVI.g10562Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g10564Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2853Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6231Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g6233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14821Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g14823Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6711Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g6713Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7600Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7603Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2944Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4156Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4158Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9309Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6107Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g6109Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00069.g3334Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00240.g7683Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nmtn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g2459Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g2461Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold583.g4734Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20335Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00716.g14730Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00716.g14732Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16137Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23807Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002818Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_002820Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05657Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19841Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10328910Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00068987Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00068989Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00100903Pristionchus pacificusFrom_analysisWormBase-Compara
chrI_pilon.g1164Caenorhabditis elegansFrom_analysisWormBase-Compara
chrI_pilon.g1166Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237267Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262801Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291381Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00131509Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Anaphase-promoting complex subunit 4, WD40 domain; Anaphase-promoting complex subunit 4 WD40 domain; WD repeat-containing protein 47; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans nmtn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA05958
Corresponding_transcriptCJA05958.1
Other_sequenceCJC10530_1
JI462666.1
BM01088
SS01843
SSC02415_1
AI111252.1
Oden_isotig19456
JI165814.1
JI480582.1
OVC01407_1
BMC13678_1
Dviv_isotig22092
Dviv_isotig22091
BMC06645_1
Experimental_infoMicroarray_resultsGPL14145_CJA05958_1065-1124_0.599_86_A
GPL14145_CJA05958_773-832_0.726_33_B
Remark[190208 pad] The CGC name Cjp-nmtn-1.2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene