WormBase Tree Display for Gene: WBGene00129139

WBGene00129139 SMap: S_parent: Sequence: Cjap.Contig17882
  Identity: Version: 7
    Name: CGC_name: Cjp-atm-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA09935
      Molecular_name: CJA09935
        CJA09935.1
        JA68527
      Public_name: Cjp-atm-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:24 WBPerson4055 Name_change: CGC_name: Cjp-atm-1
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        4 28 Oct 2013 15:52:11 WBPerson4025 Event: Acquires_merge: WBGene00121530
        5 28 Oct 2013 15:52:11 WBPerson4025 Event: Acquires_merge: WBGene00184152
        6 28 Oct 2013 15:52:11 WBPerson4025 Event: Acquires_merge: WBGene00184367
        7 28 Oct 2013 15:52:11 WBPerson4025 Event: Acquires_merge: WBGene00212671
      Acquires_merge: WBGene00121530
        WBGene00184152
        WBGene00184367
        WBGene00212671
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atm
    RNASeq_FPKM: WBls:0000004 3.61027 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 7.39559 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 3.95382 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        4.00342 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        4.05301 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 13.2251 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        1.41468 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        1.62085 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        1.98929 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        6.27311 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        7.61466 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        7.64506 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        7.67547 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        8.30119 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        8.34364 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
      WBls:0000101 4.05301 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        5.32289 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (29)
    Paralog: WBGene00119525 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00120166 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00124463 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00125840 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00126088 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00134619 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00213162 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217436 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Protein kinase-like domain superfamily; Phosphatidylinositol 3-/4-kinase, catalytic domain; Serine/threonine-protein kinase ATM/Tel1; FATC domain; Phosphatidylinositol 3- and 4-kinase; and Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily. Is an ortholog of C. elegans atm-1. In C. elegans, atm-1 is involved in response to ionizing radiation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA09935
    Corresponding_CDS_history: CJA09935:jp239
    Corresponding_transcript: CJA09935.1
    Other_sequence (12)
  Experimental_info: Expr_pattern: Expr1073825
      Expr1080583
      Expr1084656
      Expr1086148
      Expr1091447
    Microarray_results: GPL14145_CJA02326_1392-1451_0.918_8_B
      GPL14145_CJA02326_1658-1717_0.954_1_C
      GPL14145_CJA02326_1685-1744_0.952_3_A
      GPL14145_CJA09935_696-755_0.708_255_C
      GPL14145_CJA22540_299-358_0.938_2_A
      GPL14145_CJA24817_268-327_0.945_1_A
      GPL14145_CJA28793_543-602_0.958_1_A
  Method: Gene