WormBase Tree Display for Gene: WBGene00131755

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WBGene00131755	SMap	S_parent	Sequence	Cjap.Contig17562
	Identity	Version	2
		Name	CGC_name	Cjp-brf-1	From_analysis	Inferred_from_orthology
			Sequence_name	CJA12551
			Molecular_name	CJA12551a
				CJA12551a.1
				JA54273
				CJA12551b
				JA52119
				CJA12551b.1
			Public_name	Cjp-brf-1
		Species	Caenorhabditis japonica
		History	Version_change	1	29 Aug 2008 14:34:22	WBPerson4055	Event	Imported	from NGASP
							Name_change	CGC_name	Cjp-brf-1
				2	29 Jul 2011 11:13:37	WBPerson4055	Event	Imported	Augustus import
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	brf
		RNASeq_FPKM	WBls:0000004	27.4228	From_analysis	RNASeq.japonica.WBls:0000004.control_mean
						RNASeq.japonica.WBls:0000004.control_median
						RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
			WBls:0000027	11.9885	From_analysis	RNASeq.japonica.WBls:0000027.control_mean
						RNASeq.japonica.WBls:0000027.control_median
						RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
			WBls:0000038	7.68527	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
				8.73339	From_analysis	RNASeq.japonica.WBls:0000038.control_mean
						RNASeq.japonica.WBls:0000038.control_median
				9.78152	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
			WBls:0000041	13.9022	From_analysis	RNASeq.japonica.WBls:0000041.control_median
				13.9201	From_analysis	RNASeq.japonica.WBls:0000041.control_mean
				20.8865	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
				21.1651	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
				23.2877	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
				23.5208	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
				4.89233	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
				4.93504	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
				5.75567	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
				6.9178	From_analysis	RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
			WBls:0000101	12.9415	From_analysis	RNASeq.japonica.total_over_all_stages.control_mean
				9.78152	From_analysis	RNASeq.japonica.total_over_all_stages.control_median
		GO_annotation	00196636
			00196637
			00196638
		Ortholog	WBGene00000271	Caenorhabditis elegans	From_analysis	Inparanoid_8
						WormBase-Compara
			WBGene00054314	Caenorhabditis remanei	From_analysis	TreeFam
						WormBase-Compara
			WBGene00143129	Caenorhabditis brenneri	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00033945	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00224370	Brugia malayi	From_analysis	WormBase-Compara
			CSP21.g7020	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP26.g6955	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP28.g12188	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g9271	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g14681	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g6995	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g19494	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g1430	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP40.g8347	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00367.g9847	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cni-brf-1	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold526.g3070	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_00152.g5759	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_09465	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_006472	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g12553	Oscheius tipulae	From_analysis	WormBase-Compara
			Pan_g15303	Panagrellus redivivus	From_analysis	WormBase-Compara
			Sp34_20258000	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			WBGene00112176	Pristionchus pacificus	From_analysis	WormBase-Compara
			chrII_pilon.g4989	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00236977	Onchocerca volvulus	From_analysis	WormBase-Compara
			WBGene00257726	Strongyloides ratti	From_analysis	WormBase-Compara
			WBGene00289395	Trichuris muris	From_analysis	WormBase-Compara
		Paralog	WBGene00120121	Caenorhabditis japonica	From_analysis	WormBase-Compara
		Structured_description	Automated_description	Predicted to enable TBP-class protein binding activity. Predicted to be involved in transcription preinitiation complex assembly. Is an ortholog of C. elegans brf-1.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	CJA12551a
			CJA12551b
		Corresponding_transcript	CJA12551a.1
			CJA12551b.1
		Other_sequence	GP03167
			GPC02432_1
			JI164831.1
			EY472445.1
			MI06907
			TCC02505_1
			Tcol_isotig26120
			Dviv_isotig26767
			ACC16218_1
			Dviv_isotig26305
			GE626120.1
			TX00564
			EX554429.1
			JI174249.1
			MIC03789_1
			JI165406.1
	Experimental_info	Expr_pattern	Expr1080053
		Microarray_results	GPL14145_CJA12551_627-686_0.744_108_C
			GPL14145_CJA12551_757-816_0.915_5_A
			GPL14145_CJA12551_806-865_0.827_58_B
	Method	Gene