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WormBase Tree Display for Gene: WBGene00133225

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Name Class

WBGene00133225SMapS_parentSequenceCjap.Contig18190
IdentityVersion2
NameCGC_nameCjp-lin-2From_analysisInferred_from_orthology
Sequence_nameCJA14021
Molecular_nameCJA14021
CJA14021.1
JA42836
Public_nameCjp-lin-2
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:22WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-lin-2
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000414.63From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002713.2136From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000387.11241From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.27547From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
9.43853From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.87594From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.16051From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.23573From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.44775From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.59828From_analysisRNASeq.japonica.WBls:0000041.control_median
2.7062From_analysisRNASeq.japonica.WBls:0000041.control_mean
2.74882From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.97314From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.40582From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.80188From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
WBls:00001012.97314From_analysisRNASeq.japonica.total_over_all_stages.control_median
5.08032From_analysisRNASeq.japonica.total_over_all_stages.control_mean
OrthologWBGene00002991Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00016841Caenorhabditis elegansFrom_analysisTreeFam
WBGene00023607Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00051126Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00062326Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00163972Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00153410Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00232673Brugia malayiFrom_analysisWormBase-Compara
WBGene00268338Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2786Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8546Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16691Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g5618Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g14760Caenorhabditis quiockensisFrom_analysisWormBase-Compara
Cang_2012_03_13_00833.g14472Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00833.g14473Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18773Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00076.g3479Caenorhabditis sinicaFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11493Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3894Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00089578Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00239626Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00257510Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287097Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00136253Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00136310Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00134634Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00121102Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00180270Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: L27 domain, C-terminal; SH3-like domain superfamily; SH3 domain; L27 domain; Guanylate kinase/L-type calcium channel beta subunit; P-loop containing nucleoside triphosphate hydrolase; PDZ superfamily; Guanylate kinase; and PDZ domain. Is an ortholog of C. elegans lin-2. In C. elegans, lin-2 is involved in several processes, including egg-laying behavior; positive regulation of vulval development; and protein localization to membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA14021
Corresponding_transcriptCJA14021.1
Other_sequenceAcan_isotig06820
Dviv_isotig11158
FC543064.1
FC547263.1
Tcir_isotig09562
Dviv_isotig11159
TIC00168_1
Dviv_isotig11156
TS02682
BU087473.1
AJ616401.1
Oden_isotig24681
EY460218.1
EY461716.1
Tcir_isotig10318
DI01295
Name_isotig01556
Acan_isotig09943
DIC00836_1
FG350565.1
FC545257.1
HC07029
ACC05519_1
OOC01599_1
FC547878.1
FC546237.1
HCC09594_1
Tcol_isotig16165
EX564747.1
JI169587.1
Acan_isotig06819
HCC05355_1
NAC01754_1
EY462568.1
HC04520
EX557172.1
EX562973.1
Hbac_isotig06665
Dviv_isotig11157
CJC04586_1
TSC01603_1
EX565145.1
Experimental_infoExpr_patternExpr1091746
Microarray_resultsGPL14145_CJA14021_1097-1156_0.906_17_B
GPL14145_CJA14021_1228-1287_0.894_28_C
GPL14145_CJA14021_1378-1437_0.922_10_A
MethodGene