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WormBase Tree Display for Gene: WBGene00141831

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Name Class

WBGene00141831SMapS_parentSequenceCbre_Contig5
IdentityVersion1
NameCGC_nameCbn-pdcd-2From_analysisInferred_from_orthology
Sequence_nameCBN03106
Molecular_nameCBN03106
CBN03106.1
CN22533
Other_nameCBN03106
Public_nameCbn-pdcd-2
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-pdcd-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdcd
RNASeq_FPKMWBls:000000210.0923From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
12.221From_analysisRNASeq.brenneri.WBls:0000002.control_mean
12.4485From_analysisRNASeq.brenneri.WBls:0000002.control_median
14.8046From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
15.0432From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.201From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
17.638From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
28.4018From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
9.1895From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
9.83912From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:000000416.1703From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
171.682From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
93.9261From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
WBls:0000024105.911From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
150.555From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
152.483From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
81.6421From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
95.7262From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003827.5758From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
27.7999From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
28.024From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:000004111.8979From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
15.9734From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
18.3444From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
21.0778From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
30.4404From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
335.106From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
34.5106From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
35.7161From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
37.1814From_analysisRNASeq.brenneri.WBls:0000041.control_median
38.6467From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
40.9122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
42.1305From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
44.5228From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
46.369From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
48.945From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
51.0992From_analysisRNASeq.brenneri.WBls:0000041.control_mean
52.9951From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
WBls:000010121.0778From_analysisRNASeq.brenneri.total_over_all_stages.control_median
38.1693From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00204633
OrthologWBGene00011116Caenorhabditis elegansFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00037559Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00061779Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00111805Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00121522Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g5849Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1272Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5666Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g6384Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20529Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16773Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9744Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4932Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2426Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15212Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g2899Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18614Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00074.g3473Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-pdcd-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9767Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold8.g28Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00864.g16237Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14970Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04608Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4563Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30075000Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00225543Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g7449Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245610Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262793Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286954Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00142651Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in cytoplasm. Is an ortholog of C. elegans pdcd-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN03106
Corresponding_transcriptCBN03106.1
Other_sequenceTcol_isotig01587
Tcol_isotig01586
EX544718.1
FC544511.1
SC01182
Tcol_isotig01582
Acan_isotig06742
EY471452.1
Tcol_isotig01585
FK809267.1
AAC00314_1
DN190400.1
JI167617.1
CJC17808_1
Name_isotig03499
PP01603
FC548464.1
Hbac_isotig04208
Tcol_isotig01581
Tcol_isotig01584
Dviv_isotig14561
Tcol_isotig01588
EX551016.1
EY459010.1
EY465252.1
ACC00051_1
EY471173.1
GR977375.1
FK806716.1
Tcol_isotig01583
PPC02605_1
FC549321.1
Experimental_infoMicroarray_resultsGPL14142_CBN03106_126-185_0.873_12_B
GPL14142_CBN03106_352-411_0.815_38_A
GPL14142_CBN03106_907-966_0.929_1_C
GPL14142_CBN03926_200-259_0.950_1_A
MethodGene