WormBase Tree Display for Gene: WBGene00149138

WBGene00149138 SMap: S_parent: Sequence: Cbre_Contig13
  Identity: Version: 2
    Name: CGC_name: Cbn-urm-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN10413
      Molecular_name: CBN10413
        CBN10413.1
        CN01856
      Public_name: Cbn-urm-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:51 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbn-urm-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: urm
    RNASeq_FPKM: WBls:0000002 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.09616 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        2.51415 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        2.93215 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        43.1684 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        4.801 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        5.57328 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        6.83204 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        9.74941 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
      WBls:0000004 11.5932 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        23.1864 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        52.5116 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        58.1989 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        84.0273 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        84.4097 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        86.2629 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
      WBls:0000038 54.6044 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        57.4481 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        60.2918 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 102.13 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
        22.6213 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
        25.3138 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
        26.1502 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
        28.4469 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
        32.7903 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
        37.4281 From_analysis: RNASeq.brenneri.WBls:0000041.control_median
        42.0658 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
        43.2618 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
        43.5546 From_analysis: RNASeq.brenneri.WBls:0000041.control_mean
        60.4912 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
        62.5473 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
        73.1628 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
        88.5048 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
        89.3877 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
      WBls:0000101 23.1864 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        29.138 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00210618
      00210619
    Ortholog: WBGene00055767 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00087417 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00119557 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      WBGene00185048 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00213158 Caenorhabditis japonica From_analysis: Inparanoid_8
      CBOVI.g4078 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11388 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4854 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9432 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15300 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14161 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2619 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13597 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4331 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g439 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00387.g10126 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-urm-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold628.g7356 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00128.g5099 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_010457 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11753 Oscheius tipulae From_analysis: WormBase-Compara
      WBGene00113355 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00224317 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g8882 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248006 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264494 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288692 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in tRNA thio-modification. Predicted to be located in cytoplasm. Is an ortholog of C. elegans urm-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN10413
    Corresponding_transcript: CBN10413.1
    Other_sequence: CBC12747_1
      CGC00347_1
  Experimental_info: Microarray_results: GPL14142_CBN10413_3-62_0.948_3_B
      GPL14142_CBN10413_175-234_0.966_1_C
      GPL14142_CBN10413_202-261_0.870_18_A
  Method: Gene