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WormBase Tree Display for Gene: WBGene00163241

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Name Class

WBGene00163241SMapS_parentSequenceCbre_Contig156
IdentityVersion2
NameCGC_nameCbn-xpf-1.1From_analysisInferred_from_orthology
Sequence_nameCBN24516
Molecular_nameCBN24516
CBN24516.1
CN12597
Public_nameCbn-xpf-1.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:52WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-xpf-1.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpf
RNASeq_FPKMWBls:00000020.521009From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0.836615From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.02738From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
1.35348From_analysisRNASeq.brenneri.WBls:0000002.control_median
1.67959From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
1.82775From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.39234From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
3.081From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.73242From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
5.00714From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
4.39532From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
8.79063From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002410.4819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
12.4912From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
7.24537From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
9.22249From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
9.32251From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:00000386.41156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
8.01023From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
9.60891From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004110.3058From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
10.4198From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
10.5694From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
11.1525From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
23.497From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
26.561From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
4.34587From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
4.52478From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
4.74431From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
5.26901From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
7.21598From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
9.02From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
9.16507From_analysisRNASeq.brenneri.WBls:0000041.control_mean
9.16836From_analysisRNASeq.brenneri.WBls:0000041.control_median
9.31673From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
9.69888From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
WBls:00001014.74431From_analysisRNASeq.brenneri.total_over_all_stages.control_median
6.12031From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00008140Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00026063Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00053331Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g6345Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g6348Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g6352Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7395Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4620Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17040Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20266Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16867Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9437Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5411Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23759Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22429Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00800.g14214Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-xpf-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold458.g1424Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02192.g25340Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_005574Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02589Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3105Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00107973Pristionchus pacificusFrom_analysisWormBase-Compara
chrII_pilon.g6012Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00257245Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291374Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00148308Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00150486Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00159444Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans xpf-1. In C. elegans, xpf-1 is involved in DNA damage response; meiotic nuclear division; and regulation of multicellular organismal development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN24516
Corresponding_transcriptCBN24516.1
Other_sequenceCBC04779_1
MIC06355_1
Experimental_infoMicroarray_resultsGPL14142_CBN09583_697-756_0.888_35_C
GPL14142_CBN09583_798-857_0.897_28_B
MethodGene