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WormBase Tree Display for Gene: WBGene00178912

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Name Class

WBGene00178912SMapS_parentSequenceCjap.Contig1630
IdentityVersion3
NameCGC_nameCjp-fre-1From_analysisInferred_from_orthology
Sequence_nameCJA23340
Molecular_nameCJA23340
CJA23340.1
JA39910
Public_nameCjp-fre-1
SpeciesCaenorhabditis japonica
HistoryVersion_change122 Jan 2009 15:16:36WBPerson4055EventImportedfrom WASHU
227 Jan 2009 12:59:26WBPerson4055Name_changeCGC_nameCjp-fre-1
329 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfre
RNASeq_FPKMWBls:00000048.71625From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.2981From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000388.25463From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.9658From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
9.67697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.1525From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
10.7596From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
19.4091From_analysisRNASeq.japonica.WBls:0000041.control_median
21.7729From_analysisRNASeq.japonica.WBls:0000041.control_mean
28.0586From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
31.9966From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
36.809From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
38.5037From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
8.50574From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
9.39786From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
WBls:000010116.01From_analysisRNASeq.japonica.total_over_all_stages.control_mean
9.67697From_analysisRNASeq.japonica.total_over_all_stages.control_median
GO_annotation00224255
00224256
OrthologWBGene00001485Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00033796Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00069803Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00142693Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00234080Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g277Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14276Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4385Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7300Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1163Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2276Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6746Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9818Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21992Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23594Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28177Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3790Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00580.g12447Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-fre-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold75.g458Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01455.g21019Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19587Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022031Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g1783Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50430900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g18021Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248819Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00281885Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257402Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289957Trichuris murisFrom_analysisWormBase-Compara
WBGene00297499Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00127005Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00127255Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00130114Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214226Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217033Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable FMN binding activity and oxidoreductase activity. Is an ortholog of C. elegans fre-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA23340
Corresponding_transcriptCJA23340.1
Other_sequenceAcan_isotig15792
ACC30262_1
Tcol_isotig05482
MPC01629_1
EW743254.1
Tcol_isotig05481
SR04942
CR00811
Dviv_isotig18751
CRC12295_1
Acan_isotig12790
FC820328.1
Oden_isotig08959
JI169915.1
HBC28193_1
Dviv_isotig18750
Dviv_isotig30975
SRC06547_1
CN478057.1
Oden_isotig26311
EX012210.1
AYC03635_1
Oden_isotig08961
Oden_isotig08960
MP02087
Tcol_isotig05480
GO252102.1
AE02473
Experimental_infoExpr_patternExpr1083338
Microarray_resultsGPL14145_CJA23340_1400-1459_0.578_239_C
GPL14145_CJA23340_400-459_0.713_167_B
GPL14145_CJA23340_509-568_0.891_12_A
MethodGene