WormBase Tree Display for Gene: WBGene00205972
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| WBGene00205972 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-snfc-5 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA33112 | ||||||||
| Molecular_name | PPA33112 | ||||||||
| PPA33112.1 | |||||||||
| PP46814 | |||||||||
| Other_name | UMM-S413-2.63 | Person_evidence | WBPerson606 | ||||||
| Public_name | Ppa-snfc-5 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 04 Nov 2010 10:29:00 | WBPerson4055 | Event | Imported | from Assembly 2 | ||
| 2 | 18 Nov 2010 11:54:46 | WBPerson2970 | Name_change | CGC_name | Ppa-snfc-5 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-snfc-5 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-snfc-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snfc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 7.02558 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 24.4702 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 66.3851 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 7.02558 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| GO_annotation | 00231698 | ||||||||
| 00231699 | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in chromatin remodeling. Predicted to be located in nuclear chromosome. Is an ortholog of C. elegans snfc-5. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA33112 | |||||||
| Corresponding_CDS_history | PPA33112:pp274 | ||||||||
| Corresponding_transcript | PPA33112.1 | ||||||||
| Other_sequence (78) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_47865 | |||||||
| GPL14372_Probes_47866 | |||||||||
| GPL14372_Probes_47867 | |||||||||
| GPL14372_Probes_47868 | |||||||||
| GPL14372_Probes_47869 | |||||||||
| Expression_cluster | WBPaper00041472:Phosphorylated_protein | ||||||||
| WBPaper00050265:C.albidus_vs_OP50_upregulated | |||||||||
| WBPaper00050265:C.curvatus_vs_OP50_upregulated | |||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-snfc-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-snfc-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
