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WormBase Tree Display for Gene: WBGene00241747

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Name Class

WBGene00241747SMapS_parentSequenceOVOC_OM2_49
IdentityVersion2
NameCGC_nameOvo-spl-1From_analysisInferred_from_orthology
Sequence_nameOVOC4938
Molecular_nameOVOC4938
OVOC4938.1
OVP02714
OVOC4938.2
Public_nameOvo-spl-1
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:33WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:32WBPerson4055Name_changeCGC_nameOvo-spl-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspl
RNASeq_FPKMWBls:00001016.40417From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
6.44196From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
WBls:00001040.963317From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.SRP056861.SRX978162
12.1903From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978163
1.53254From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450842
1.81871From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529045
2.3528From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450840
3.60659From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529044
4.66838From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.ERP001350.ERX200394
5.14508From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978157
5.58349From_analysisRNASeq.ovolvulus.WBls:0000104.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450841
5.703From_analysisRNASeq.ovolvulus.WBls:0000104.control_mean
6.40833From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978159
6.47558From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978164
7.43592From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978160
8.12313From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978156
9.41967From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978158
9.82112From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978161
WBls:00001076.14338From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010811.0939From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
11.42From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
15.7337From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
7.43244From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:00006647.11315From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
7.47166From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
7.83018From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
GO_annotation00255675
00255676
00255677
OrthologWBGene00155014Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190314Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00038467Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00231265Brugia malayiFrom_analysisWormBase-Compara
WBGene00006418Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00127882Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00129630Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g1738Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5533Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16362Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18159Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g4632Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18150Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26154Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g18138Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4109Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23739Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g362Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00018.g1181Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00509.g11690Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10631.g22764Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tag-38Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g16865Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00636.g13853Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03337Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_19121Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017178Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09937Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17333Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50237400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00068627Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00073764Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00098516Pristionchus pacificusFrom_analysisWormBase-Compara
chrV_pilon.g15183Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267457Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291373Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00237151Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00240996Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00241267Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00246178Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00247592Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable carbon-carbon lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in carboxylic acid metabolic process. Is an ortholog of C. elegans spl-2. In C. elegans, spl-2 is involved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC4938
Corresponding_transcriptOVOC4938.1
OVOC4938.2
Other_sequenceBMC02444_1
Acan_isotig08057
EX535929.1
JI465803.1
CRC02882_1
FG354753.1
Tcir_isotig27785
Dviv_isotig09463
EX549295.1
Acan_isotig08188
Dviv_isotig09465
JI464285.1
Dviv_isotig15603
Tcol_isotig23466
EX544716.1
Dviv_isotig09464
Hbac_isotig01110
ACC04953_1
GR977176.1
JI462934.1
Tcir_isotig06573
Dviv_isotig15604
Dviv_isotig09462
CR05015
EY468932.1
Tcir_isotig05261
FF679861.1
CJC12933_1
HBC12715_1
SC00457
Tcol_isotig15722
FK800987.1
Oden_isotig18796
JI168877.1
ReferenceWBPaper00051570
MethodGene