Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00245401

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00245401SMapS_parentSequenceOVOC_OM3_77
IdentityVersion2
NameCGC_nameOvo-snfc-5From_analysisInferred_from_orthology
Sequence_nameOVOC8592
Molecular_nameOVOC8592
OVOC8592.1
OVP00501
Public_nameOvo-snfc-5
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:33WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:33WBPerson4055Name_changeCGC_nameOvo-snfc-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnfc
RNASeq_FPKMWBls:000010142.3317From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
50.8232From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
WBls:000010410.7628From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978159
14.5768From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978156
15.1483From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450840
17.4506From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978157
19.1139From_analysisRNASeq.ovolvulus.WBls:0000104.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529044
28.0705From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978160
30.1397From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978158
33.6453From_analysisRNASeq.ovolvulus.WBls:0000104.control_mean
3.36562From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.SRP056861.SRX978162
57.4975From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978161
59.3062From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978164
62.413From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978163
74.142From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.ERP001350.ERX200394
9.19028From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529045
93.6636From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450841
9.83885From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450842
WBls:000010770.4525From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010854.5238From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
64.8237From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
68.1235From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
71.8237From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:0000664168.723From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
174.254From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
179.785From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
GO_annotation00259326
00259327
00259328
00259329
00259330
00259331
00259332
OrthologWBGene00152300Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00037566Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225541Brugia malayiFrom_analysisWormBase-Compara
WBGene00011111Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00137698Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g5853Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9413Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5657Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20533Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16768Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9751Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4926Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2421Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28675Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29545Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18605Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00074.g3477Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-snfc-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold8.g20Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00864.g16228Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_010107Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03808Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10441Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17991Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30075500Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00061786Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00205972Pristionchus pacificusFrom_analysisWormBase-Compara
chrIII_pilon.g7443Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00262776Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293226Trichuris murisFrom_analysisWormBase-Compara
WBGene00297294Trichuris murisFrom_analysisWormBase-Compara
WBGene00298750Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in RNA processing and chromatin remodeling. Predicted to be located in cytoplasm and nuclear chromosome. Is an ortholog of C. elegans snfc-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC8592
Corresponding_transcriptOVOC8592.1
Other_sequenceAW313055.1
AW874881.1
OVC03594_1
Tcir_isotig14727
Tcol_isotig15821
Acan_isotig17817
HG04122
DA04719
MHC02064_1
CR03928
MJC00134_1
Dviv_isotig21847
Oden_isotig10179
ACC01634_1
TMC01050_1
FC812905.1
EX563695.1
BXC01241_1
TM01647
MIC07734_1
EX563635.1
FC821582.1
RS09987
ES740307.1
Dviv_isotig22722
PPC10607_1
MHC01659_1
HGC08765_1
HBC00299_1
EX008813.1
HG00046
Name_isotig02850
MP02003
EX014874.1
Tcir_isotig02578
SRC00124_1
Oden_isotig10180
TM01411
GPC00267_1
EX012696.1
MI02412
PE00072
HGC05539_1
FC818608.1
SR01252
EX914131.1
HCC07730_1
HC03228
Tcir_isotig01736
MI08326
Tcir_isotig09914
FC819243.1
CRC01048_1
Dviv_isotig21848
ES741731.1
XI01506
MPC01555_1
DA05049
HGC10892_1
ES742528.1
HBC19194_1
HG10963
RS06338
CRC06746_1
HGC00333_1
HG00660
Tcir_isotig01735
EX554829.1
EX559511.1
EX011885.1
DIC00567_1
EX552075.1
ES740456.1
Name_isotig00918
MIC00549_1
Oden_isotig10183
GRC01897_1
EX560136.1
FG619195.1
Hbac_isotig05009
GR17628
LSC00147_1
EX544781.1
EX563266.1
HC07505
GP00705
CR07880
BMC04944_1
GR10755
RSC03671_1
EX558933.1
Oden_isotig10181
GR10285
Acan_isotig12887
Oden_isotig15785
DI00891
ES566848.1
WBC01806_1
CRC00636_1
Hbac_isotig03640
GP03127
EX014820.1
GR17629
BMC06958_1
GRC05636_1
Oden_isotig10182
DN556742.1
EX560962.1
MC00972
CR03908
FC816750.1
PEC00362_1
SRC01048_1
NB08048
MCC05257_1
JI241729.1
TSC14518_1
HC07597
GR11372
MH00600
CR01787
FC820953.1
Hbac_isotig07305
Tcir_isotig06666
HG01031
XIC00253_1
JI173910.1
CJC03198_1
ES740434.1
ES411475.1
CBC02778_1
CN477873.1
DAC00549_1
Acan_isotig09178
EX554616.1
CJC00874_1
EX561639.1
DAC01118_1
MH02696
Tcir_isotig02579
NBC00440_1
EX554546.1
DA04271
CD203227.1
DN556749.1
HGC00333_2
Oden_isotig15784
MI00919
Oden_isotig10178
DN558088.1
Tcol_isotig18728
Tcir_isotig01738
JI210996.1
HCC01462_1
HG00125
FC813419.1
EX013944.1
CK850369.1
MJ01517
BMC03622_1
ACC03956_1
RSC00400_1
Tcir_isotig01737
MethodGene