WormBase Tree Display for Gene: WBGene00277442
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| WBGene00277442 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-spe-39 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA39073 | ||||||||
| Molecular_name | PPA39073 | ||||||||
| PPA39073.1 | |||||||||
| PP54183 | |||||||||
| Public_name | Ppa-spe-39 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-spe-39 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-spe-39 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-spe-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spe | ||||||||
| RNASeq_FPKM | WBls:0000032 | 24.5762 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 11.1633 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 11.9132 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (32) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Spermatogenesis-defective protein 39 and Vps16, C-terminal domain superfamily. Is an ortholog of C. elegans spe-39. In C. elegans, spe-39 is involved in germ cell development; vacuolar protein processing; and vacuolar transport. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA39073 | |||||||
| Corresponding_transcript | PPA39073.1 | ||||||||
| Other_sequence | CR02559 | ||||||||
| PPC10298_1 | |||||||||
| CR12550 | |||||||||
| JI170420.1 | |||||||||
| CRC01348_1 | |||||||||
| PPC02941_1 | |||||||||
| HCC12012_1 | |||||||||
| Oden_contig11733 | |||||||||
| HC01139 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_63291 | |||||||
| GPL14372_Probes_63294 | |||||||||
| GPL14372_Probes_63295 | |||||||||
| GPL14372_Probes_63296 | |||||||||
| GPL14372_Probes_63297 | |||||||||
| GPL14372_Probes_63298 | |||||||||
| GPL14372_Probes_63299 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-spe-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-spe-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
