WormBase Tree Display for Gene: WBGene00278611

WBGene00278611 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 6
    Name: CGC_name: Ppa-sqv-6 From_analysis: Inferred_from_orthology
      Sequence_name: PPA40242
      Molecular_name: PPA40242
        PPA40242.1
        PP53225
      Public_name: Ppa-sqv-6
    Species: Pristionchus pacificus
    History: Version_change: 1 24 Nov 2017 16:14:22 WBPerson4055 Event: Created
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-sqv-6
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Ppa-sqv-6
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-sqv-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sqv
    RNASeq_FPKM: WBls:0000032 6.75105 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 4.46497 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        6.64386 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00284563
      00284564
      00284565
    Ortholog (32)
    Paralog: WBGene00090967 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00094777 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00097934 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00109043 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00203476 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00275786 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276633 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00279754 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00305169 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable glycosyltransferase activity and oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen. Predicted to be located in membrane. Is an ortholog of C. elegans sqv-6. In C. elegans, sqv-6 is involved in several processes, including UDP-D-xylose metabolic process; egg-laying behavior; and glycosaminoglycan biosynthetic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA40242
    Corresponding_transcript: PPA40242.1
    Other_sequence (75)
  Experimental_info: Microarray_results: GPL14372_Probes_63383
      GPL14372_Probes_63384
      GPL14372_Probes_63385
      GPL14372_Probes_63386
      GPL14372_Probes_63387
    Expression_cluster: WBPaper00041466:PP_germline-ablation_regulated
  Remark: [190208 pad] The CGC name Ppa-sqv-6 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-sqv-6 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene