WormBase Tree Display for Gene: WBGene00305012
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| WBGene00305012 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | Ppa-cpn-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA47150 | ||||||||
| Molecular_name | PPA47150 | ||||||||
| PPA47150.1 | |||||||||
| PP75335 | |||||||||
| Public_name | Ppa-cpn-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 26 Sep 2019 11:31:07 | WBPerson4055 | Event | Split_from | WBGene00090599 | ||
| 2 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-cpn-3 | ||||
| 3 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-cpn-3 | ||||
| Split_from | WBGene00090599 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpn | ||||||||
| RNASeq_FPKM | WBls:0000032 | 179.735 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 59.9117 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00096231 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00101020 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00108049 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273421 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-3. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA47150 | |||||||
| Corresponding_transcript | PPA47150.1 | ||||||||
| Other_sequence (233) | |||||||||
| Remark | [210528 pad] The CGC name Ppa-cpn-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
