WormBase Schema for Model: Sequence
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?Sequence | DNA | UNIQUE | ?DNA | UNIQUE | Int | |||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Canonical_parent | UNIQUE | ?Sequence | XREF | Genomic_non_canonical | |
Genomic_parent | UNIQUE | ?Sequence | XREF | Nongenomic | ||||
AGP_parent | UNIQUE | ?Sequence | XREF | AGP_fragment | ||||
S_child (15) | ||||||||
Structure (8) | ||||||||
DB_info | Database | ?Database | ?Database_field | ?Text | ||||
Protein_id | ?Sequence | UNIQUE | Text | UNIQUE | Int | |||
Secondary_accession | ?Text | |||||||
DB_remark | ?Text | #Evidence | ||||||
Keyword | ?Keyword | |||||||
DB_annotation | ?Database | UNIQUE | ?LongText | |||||
EMBL_dump_info | #EMBL_dump_info | |||||||
Origin (13) | ||||||||
Visible | Title | UNIQUE | ?Text | |||||
Matching_CDS | ?CDS | XREF | Matching_cDNA | #Evidence | ||||
Matching_transcript | ?Transcript | XREF | Matching_cDNA | #Evidence | ||||
Matching_pseudogene | ?Pseudogene | XREF | Matching_cDNA | #Evidence | ||||
Clone | ?Clone | XREF | Sequence | |||||
Clone_end_seq_read | ?Clone | XREF | End_sequence | |||||
GO_term | ?GO_term | XREF | Sequence | ?GO_code | #Evidence | |||
Gene | ?Gene | XREF | Other_sequence | |||||
Paired_read | ?Sequence | XREF | Paired_read | |||||
Reference | ?Paper | XREF | Sequence | |||||
Expr_pattern | ?Expr_pattern | XREF | Sequence | |||||
Interaction | ?Interaction | |||||||
RNAi | ?RNAi | XREF | Sequence | |||||
Confidential_remark | ?Text | |||||||
Remark | ?Text | #Evidence | ||||||
Properties | Genomic_canonical | Gene_count | UNIQUE | Int | ||||
Briggsae_canonical | ||||||||
Genomic | ||||||||
Checksum | MD5 | UNIQUE | Text | |||||
CRC64 | UNIQUE | Text | ||||||
cDNA | cDNA_EST | |||||||
EST_5 | ||||||||
EST_3 | ||||||||
Capped_5 | ||||||||
TSL_tag | ||||||||
EST_consensus | ||||||||
RNA | UNIQUE | mRNA | UNIQUE | Processed_mRNA | ||||
Unprocessed_mRNA | ||||||||
tRNA | Type | UNIQUE | Text | |||||
Anticodon | UNIQUE | Text | ||||||
rRNA | UNIQUE | Text | ||||||
snRNA | UNIQUE | Text | ||||||
snoRNA | UNIQUE | Text | ||||||
scRNA | UNIQUE | Text | ||||||
miRNA | UNIQUE | Text | ||||||
ncRNA | UNIQUE | Text | ||||||
Ignore | #Evidence | |||||||
Show_in_reverse_orientation | ||||||||
Status (9) | ||||||||
Match_type | UNIQUE | Match_with_function | ||||||
Match_without_function | ||||||||
Link | ||||||||
Splices | Confirmed_intron | Int | Int | #Splice_confirmation | ||||
Predicted_5 | ?Method | Int | Int | UNIQUE | Float | |||
Predicted_3 | ?Method | Int | Int | UNIQUE | Float | |||
Cluster_information | Contains_reads | ?Sequence | XREF | Contained_in_cluster | ||||
Contained_in_cluster | ?Sequence | XREF | Contains_reads | |||||
Map | ?Map | XREF | Sequence | #Map_position | ||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||
Oligo | ?Oligo | XREF | In_sequence | Int | UNIQUE | Int | ?Method | |
Defines_feature | ?Feature | XREF | Defined_by_sequence | #Evidence | ||||
Assembly_tags | Text | Int | Int | Text | ||||
Homol (4) | ||||||||
Method | UNIQUE | ?Method |