WormBase Tree Display for Sequence: R07D5

R07D5 DNA: R07D5 24629
  SMap: S_child: Gene_child: WBGene00200026 14549 14689
        WBGene00201791 4110 3988
        WBGene00197989 21597 21735
        WBGene00200679 12484 12620
        WBGene00195580 23517 23638
        WBGene00196247 18036 18170
        WBGene00199254 18167 18033
      CDS_child: R07D5.1a 14526 8774
        R07D5.1b 12400 8774
        R07D5.1c 11970 8774
        R07D5.1f 21547 8774
        R07D5.1g 21547 8774
        R07D5.1h 18761 8774
        R07D5.1i 18761 8774
        R07D5.1j 14526 8774
        R07D5.2:wp131 3562 123
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g83_x31_X_m 14127 12065
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g82_x31_X_m 9664 9575
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g94_x31_X_m 8914 8864
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g97_x31_X_m 3429 2436
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g128_x31_X_m 185 132
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g98_x31_X_m 365 294
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g34_x31_X_m 11739 8777
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g42_x31_X_m 12008 11908
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g73_x31_X_m 1765 1371
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g34s1k174_x31_X_m 14526 11538
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g103_x31_X_m 1869 1772
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g115_x31_X_m 1394 324
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g30_x31_X_m 14526 8777
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g40_x31_X_m 11970 11905
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g51_x31_X_m 9942 8777
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g34_x31_X_m 11739 10151
        RNASEQ_embryo_him-8_20dC_post-L1_g67_x31_X_m 14526 14386
        RNASEQ_embryo_him-8_20dC_post-L1_g43_x31_X_m 1702 1419
        RNASEQ_embryo_him-8_20dC_post-L1_g36_x31_X_m 11739 8777
        RNASEQ_embryo_him-8_20dC_post-L1_g50s1k89_x31_X_m 14526 11872
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g49_x31_X_m 11739 8777
        RNASEQ_L4_soma_JK1107_no_DNaseI_g77_x31_X_m 9858 9572
        RNASEQ_L4_soma_JK1107_no_DNaseI_g148_x31_X_m 1586 1443
        RNASEQ_L4_soma_JK1107_no_DNaseI_g75_x31_X_m 14358 12095
        RNASEQ_L4_soma_JK1107_no_DNaseI_g104_x31_X_m 11739 10214
        RNASEQ_L4_soma_JK1107_no_DNaseI_g135_x31_X_m 8914 8828
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g129_x31_X_m 1702 1593
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g100_x31_X_m 1765 1715
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g24n11_x31_X_m 14526 8777
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g116_x31_X_m 2477 2427
        RNASEQ_early_embryo_g30_x31_X_m 11970 8777
        RNASEQ_early_embryo_g73_x31_X_m 14526 14461
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30n11_x31_X_m 14526 8777
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g29_x31_X_m 14526 8777
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g103_x31_X_m 1765 132
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g101_x31_X_m 2477 2421
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g49s1k91_x31_X_m 14526 8777
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g117_x31_X_m 1603 1535
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g123_x31_X_m 3444 2439
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g59_x31_X_m 11970 8777
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g120_x31_X_m 2163 1990
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g91_x31_X_m 2448 2234
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g89_x31_X_m 11685 10390
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g92_x31_X_m 9858 9557
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g109_x31_X_m 10383 10184
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g102_x31_X_m 11970 11719
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g123_x31_X_m 14391 14119
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g81_x31_X_m 10099 9898
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g110_x31_X_m 2477 2430
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g73_x31_X_m 1699 1419
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g117_x31_X_m 2169 1990
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g153_x31_X_m 1765 1715
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g158_x31_X_m 9933 9823
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g101_x31_X_m 10452 10211
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g52n11_x31_X_m 2478 2261
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g87_x31_X_m 14369 14076
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g89_x31_X_m 10423 10287
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g74_x31_X_m 2097 1909
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g60_x31_X_m 1765 1401
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g106_x31_X_m 11619 10456
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g134_x31_X_m 9604 9557
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g87_x31_X_m 10383 10184
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g78_x31_X_m 11685 10387
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g77_x31_X_m 9664 9575
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g96_x31_X_m 11739 11692
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g102_x31_X_m 2477 2421
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48_x31_X_m 14127 12065
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g83_x31_X_m 10099 9901
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g128_x31_X_m 1682 1576
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g61_x31_X_m 9858 8777
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g53_x31_X_m 14127 12071
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g71_x31_X_m 10452 10127
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g95_x31_X_m 1556 1401
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g80_x31_X_m 11970 11722
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g69_x31_X_m 8252 8199
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g116_x31_X_m 10395 10244
        R07D5.gc1 3562 259
        R07D5.gc2 12139 8774
        ContigX.elegans.jigsaw.2442.mRNA2442 14580 7815
        AG1201_R07D5.2.T1 2478 1867
        AG1201_R07D5.1.T16 11970 8774
        AG1201_R07D5.1.T15 12400 8774
        AG1201_R07D5.1.T10 14526 8774
        AG1201_R07D5.1.T7 14526 8774
        AG1201_R07D5.1.T12 18761 8774
        AG1201_R07D5.1.T14 21547 8774
        AG1201_R07D5.1.T1 14127 12065
      Transcript (14)
      PCR_product: cenix:114-b4 1066 2306
        cenix:140-h9 9552 10437
        mv_CAA79529 8777 14525
        mv_R07D5.2 125 3561
        p_R07D5.1_93 14527 16526
        sjj_R07D5.1 8779 10461
        sjj_R07D5.2 1339 2453
      Allele (421)
      Oligo_set: Aff_R07D5.1 10207 8774
        Aff_R07D5.2 1917 123
      Feature_object: WBsf1008098 8242 8392
        WBsf1008099 12642 12792
        WBsf1008100 13742 13892
        WBsf1008101 18782 18932
        WBsf1008102 19162 19312
        WBsf1008103 22062 22212
        WBsf1024512 8222 8372
        WBsf1024513 12642 12792
        WBsf1024514 19122 19272
        WBsf1024515 22042 22192
        WBsf021124 6865 6866
        WBsf038803 12453 12452
        WBsf116008 8579 8579
        WBsf132103 21611 21610
        WBsf204421 2479 2478
        WBsf210287 8579 8579
        WBsf215950 7814 7813
        WBsf238294 8773 7817
        WBsf238295 8773 8184
        WBsf238296 8773 8258
        WBsf238297 8773 8584
        WBsf238298 8773 8651
        WBsf238299 8773 8722
        WBsf259101 7800 7799
        WBsf267888 18684 18685
        WBsf278665 7816 7815
        WBsf279396 19802 19801
        WBsf640047 7932 7931
        WBsf973004 3569 3568
        WBsf559816 19168 19289
        WBsf560471 12197 12746
        WBsf560475 15184 15437
        WBsf560483 13779 13943
        WBsf560748 21939 22136
        WBsf561034 12174 12801
        WBsf561143 15159 15536
        WBsf561175 13838 13974
        WBsf561717 15244 15600
        WBsf561834 12146 12354
        WBsf562024 12582 12781
        WBsf562111 13795 13811
        WBsf585703 769 902
        WBsf593761 4183 4183
        WBsf594298 3872 3872
        WBsf600044 15253 15481
        WBsf600289 12549 12781
        WBsf038795 14372 12428
        WBsf671342 1422 1412
        WBsf671343 2424 2411
        WBsf671344 2851 2822
        WBsf671345 13790 13763
        WBsf692371 1625 1698
        WBsf692372 2925 2981
        WBsf692373 5344 5365
        WBsf692374 5620 5634
        WBsf692375 8148 8223
        WBsf692376 8258 8260
        WBsf692377 13940 13975
        WBsf692378 17336 17353
        WBsf692379 18643 18652
        WBsf692380 18963 18963
        WBsf714402 5204 5204
        WBsf714403 5285 5285
        WBsf714404 7949 7927
        WBsf714405 18862 18840
        WBsf714406 19262 19238
        WBsf714407 19778 19774
        WBsf714408 23539 23515
        WBsf264547 13529 13575
      Feature_data: R07D5:TranscriptionallyActiveRegion 1 24629
        R07D5:ChIPSeqTF 1 24629
        R07D5:TRF 1 24629
        R07D5:Dust 1 24629
        R07D5:inverted 1 24629
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: C11G10 24526
    Overlap_left: F09B12
    Clone_left_end: R07D5 1
      C11G10 24526
    Clone_right_end: F09B12 12426
  DB_info: Database: EMBL NDB_AC Z70685
        NDB_SV Z70685.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Smye R
    From_laboratory: HX
    Date_directory: 951024
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: R07D5
  Properties: Genomic_canonical
    Checksum: MD5: 52e3a7c8fd47520537618270de1ca09c
    Status: Finished: 24 Oct 1995 00:00:00
      Submitted: 06 Apr 1996 00:00:00
      Annotated: 03 Apr 1996 00:00:00
  Map: Sequence-X Ends: Left: 8243
        Right: 8261
  Interpolated_map_position: X 22.0129
  Assembly_tags: Finished Left 1 1
    Clone right end 12423 12426 F09B12
    annotation 13906 13909 sequence unclear on this region
      13911 13934 unsure about the number of C's here.
    Finished Right 24629 24629
    Clone left end 1 6 R07D5 left hand end.
      24526 24529 C11G10 left hand end.
  Method: Genomic_canonical