WormBase Tree Display for Sequence: Y40D12A

Y40D12A DNA: Y40D12A 9871
  SMap: S_child: Gene_child: WBGene00021503 2329 4950
        WBGene00021502 5215 9852
        WBGene00005263 623 2362
      CDS_child: Y40D12A.1 5232 9656
        Y40D12A.1b:wp282 5232 6331
        Y40D12A.2 2354 4867
        Y40D12A.3 623 2064
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g67n11m6_x14_III_p 5232 9653
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g81_x14_III_p 2354 4819
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g73_x14_III_p 6315 6389
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g197_x14_III_p 2500 2553
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g180_x14_III_p 3052 3401
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g112_x14_III_p 3498 3731
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g175_x14_III_p 6609 6795
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g86n11_x14_III_p 5232 5421
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g190_x14_III_p 4098 4762
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g108_x14_III_p 5547 6572
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g100_x14_III_p 6942 9653
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g243_x14_III_p 6715 6798
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g129_x14_III_p 3997 4777
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g146_x14_III_p 5547 6122
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g99_x14_III_p 2525 2818
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g92_x14_III_p 3417 3671
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g52_x14_III_p 3052 3392
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g147_x14_III_p 2354 2422
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g88_x14_III_p 3997 4777
        RNASEQ_embryo_him-8_20dC_post-L1_g203_x14_III_p 3498 3560
        RNASEQ_embryo_him-8_20dC_post-L1_g110_x14_III_p 6609 6822
        RNASEQ_embryo_him-8_20dC_post-L1_g71_x14_III_p 6942 9653
        RNASEQ_embryo_him-8_20dC_post-L1_g63_x14_III_p 5880 6536
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g127_x14_III_p 5547 6248
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g110_x14_III_p 5880 6569
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g116_x14_III_p 6609 9653
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g107_x14_III_p 5547 5723
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g64_x14_III_p 2354 4825
        RNASEQ_early_embryo_g136_x14_III_p 4059 4828
        RNASEQ_early_embryo_g58n11m6_x14_III_p 6177 6389
        RNASEQ_early_embryo_g103_x14_III_p 2848 3999
        RNASEQ_early_embryo_g58n11_x14_III_p 6315 9653
        RNASEQ_early_embryo_g58n11e10k80_x14_III_p 5232 6328
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g91_x14_III_p 2848 4804
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66n11_x14_III_p 5232 9653
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66n11e9k67_x14_III_p 6882 7019
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g69_x14_III_p 5547 9653
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24_x14_III_p 2354 4139
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g49_x14_III_p 4490 4864
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g116_x14_III_p 6315 9653
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g126_x14_III_p 5547 6026
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g25_x14_III_p 4058 4864
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g23e9k96_x14_III_p 2354 4184
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g142n11_x14_III_p 8993 9653
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g62_x14_III_p 2354 3063
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g14n11_x14_III_p 2848 4864
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g57n11_x14_III_p 5232 9013
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g113_x14_III_p 5598 9653
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g30_x14_III_p 2354 4139
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g47_x14_III_p 4490 4864
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g61n11_x14_III_p 5232 9653
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g91_x14_III_p 2354 4864
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g127_x14_III_p 2354 2553
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g112_x14_III_p 3178 3803
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g222_x14_III_p 3883 3948
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g147_x14_III_p 4059 4732
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g65n11_x14_III_p 5232 9653
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g92_x14_III_p 6942 9653
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g67n11_x14_III_p 5232 6500
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g44_x14_III_p 2354 4828
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g115_x14_III_p 3363 4813
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g68n11_x14_III_p 5232 6134
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g83_x14_III_p 6315 9013
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g103n11_x14_III_p 8993 9653
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g117_x14_III_p 2354 2895
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g41_x14_III_p 2354 4864
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g55n11_x14_III_p 5232 9653
        Y40D12A.gc1 776 5098
        Y40D12A.gc2 5232 9656
        ContigIII.elegans.jigsaw.1271.mRNA1271 5049 9853
        ContigIII.elegans.jigsaw.1270.mRNA1270 2299 4949
        ContigIII.elegans.jigsaw.1269.mRNA1269 549 2113
        AG1201_Y40D12A.3.T1 623 2064
        AG1201_Y40D12A.2.T1 2354 4142
        AG1201_Y40D12A.2.T2 2354 4867
        AG1201_Y40D12A.2.T3 2354 4867
        AG1201_Y40D12A.1.T5 5232 5777
        AG1201_Y40D12A.1.T4 5232 6203
        AG1201_Y40D12A.1.T3 5232 9656
        AG1201_Y40D12A.1.T2 5880 9656
        AG1201_Y40D12A.1.T1 6315 9656
      Transcript: Y40D12A.1.1 5215 9852
        Y40D12A.2.1 2329 4950
        Y40D12A.3.1 623 2362
      PCR_product (14)
      Allele (106)
      Oligo_set: Aff_Y40D12A.1 6525 9233
        Aff_Y40D12A.2 3822 4867
        Aff_Y40D12A.3 1173 2064
      Feature_object (66)
      Feature_data: Y40D12A:Polysome 1 9871
        Y40D12A:TranscriptionallyActiveRegion 1 9871
        Y40D12A:ChIPSeqTF 1 9871
        Y40D12A:TRF 1 9871
        Y40D12A:Dust 1 9871
        Y40D12A:inverted 1 9871
      Homol_data (17)
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: C13B9 9072
    Overlap_left: F20H11
    Clone_left_end: C13B9 9072
      Y40D12A 1
    Clone_right_end: F20H11 200
  DB_info: Database: EMBL NDB_AC FO080525
        NDB_ID _AF078792
        NDB_SV FO080525.2
    Secondary_accession: AC006758
      AF078792
    DB_remark: The 5' clone is F20H11, 200 bp overlap; the 3' clone is C13B9, 800 bp overlap. Actual end of this clone is at base position 9201 of C13B9.
      [121025] Sequence correction: SNP 0 bases @ 9078
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Smith A
      Harmon G
    From_laboratory: RW
    Date: 22 Jan 1998 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: Y40D12A
    Remark: added 600 bp to the 3' end 020402 db
  Properties: Genomic_canonical
    Checksum: MD5: df5aae672ef99c63a67cd8787a20213c
    Status (2)
  Map: Sequence-III
  Interpolated_map_position: III -1.03597
  Method: Genomic_canonical