WormBase Tree Display for Sequence: ZC47

ZC47 DNA: ZC47 26347
  SMap: S_child: Gene_child (12)
      CDS_child: ZC47.3 8352 7220
        ZC47.3a:wp144 8352 7220
        ZC47.3b:wp144 8352 6728
        ZC47.4 10264 9190
        ZC47.5 6061 4306
        ZC47.6 3920 2079
        ZC47.7 1531 349
        ZC47.8:wp18 13566 12636
        ZC47.9:wp18 15450 16401
        ZC47.9:wp150 14303 16401
        ZC47.10:wp18 18006 17077
        ZC47.10:wp126 18820 17077
        ZC47.12:wp18 24722 25614
        ZC47.12:wp159 24423 25614
        ZC47.13:wp18 22745 21975
        ZC47.13a 23199 21975
        ZC47.14 19692 21727
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g120_x3_III_m 8098 8006
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g128_x3_III_m 17466 17284
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g145_x3_III_p 15450 15584
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g181_x3_III_p 24519 24850
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g143_x3_III_m 5204 5064
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g126_x3_III_p 19773 21049
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g139_x3_III_m 6041 5979
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g147_x3_III_p 21462 21563
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g77_x3_III_p 15450 15524
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g31n11_x3_III_m 18820 17866
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g107_x3_III_m 3881 3594
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g59_x3_III_p 19692 21016
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g75_x3_III_m 17403 17275
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g153_x3_III_m 10235 10182
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g130_x3_III_m 3920 3573
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g28_x3_III_p 19692 21010
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g121_x3_III_m 3885 3838
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g137_x3_III_p 21462 21569
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g96_x3_III_m 8310 8090
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g52n11_x3_III_p 14303 15482
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g65_x3_III_p 19692 20923
        RNASEQ_embryo_him-8_20dC_post-L1_g76_x3_III_p 19692 20866
        RNASEQ_embryo_him-8_20dC_post-L1_g136_x3_III_m 3885 3838
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g50n11_x3_III_m 8352 7607
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g57_x3_III_p 19692 21724
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g37n11_x3_III_p 14303 15617
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g210_x3_III_m 3920 3840
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g48_x3_III_m 10264 9837
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g66_x3_III_m 4526 4309
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g75_x3_III_m 13303 12696
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g221_x3_III_m 23199 22766
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g127_x3_III_m 17403 17284
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g62n11_x3_III_m 6061 4590
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g101_x3_III_m 9485 9349
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g66m1_x3_III_m 4527 4309
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g186_x3_III_p 16104 16305
        RNASEQ_L4_soma_JK1107_no_DNaseI_g55n11_x3_III_m 6061 4974
        RNASEQ_L4_soma_JK1107_no_DNaseI_g59_x3_III_p 19692 21181
        RNASEQ_L4_soma_JK1107_no_DNaseI_g61n11_x3_III_m 23199 22676
        RNASEQ_L4_soma_JK1107_no_DNaseI_g21n11_x3_III_p 14303 15617
        RNASEQ_L4_soma_JK1107_no_DNaseI_g63n11_x3_III_m 8352 8039
        RNASEQ_L4_soma_JK1107_no_DNaseI_g115_x3_III_m 10264 10038
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g131_x3_III_m 10264 9945
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g57n11_x3_III_m 23199 22652
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g53_x3_III_p 19692 21724
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g55n11_x3_III_m 5205 4460
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g43n11_x3_III_m 8352 7451
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g18n11_x3_III_p 15645 16398
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g32s2k125_x3_III_m 18006 17506
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g32e2k106_x3_III_m 18820 18737
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g67_x3_III_m 17502 17176
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g55n11m3_x3_III_m 4527 4309
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g99_x3_III_p 24483 24775
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g32_x3_III_m 18820 17596
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g50n11_x3_III_m 3920 3838
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g115n11_x3_III_m 6061 3261
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g107_x3_III_m 12851 12639
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g153_x3_III_m 7113 6926
        RNASEQ_early_embryo_g92_x3_III_p 21536 21637
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g73_x3_III_p 15450 15530
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g55_x3_III_p 19692 21673
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g104_x3_III_m 3275 3030
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g57_x3_III_m 18924 18784
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g113_x3_III_p 19692 19772
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g45n11_x3t1_III_m 6061 4460
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g45n11m3_x3t1_III_m 4527 4309
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g33n11_x3_III_m 8352 7451
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g87_x3_III_p 21047 21724
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g116_x3_III_p 16192 16308
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g104_x3_III_m 3641 2106
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g125_x3_III_m 7960 7484
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g127_x3_III_p 15996 16218
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g72_x3_III_m 18820 18737
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g73_x3_III_p 19773 21724
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g114_x3_III_m 3647 3060
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g33n11m3_x3t1_III_m 4527 4309
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g107_x3_III_m 17502 17233
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g120_x3_III_m 13000 12768
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g109_x3_III_m 3053 2088
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g33n11_x3t1_III_m 6061 4460
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g34n11_x3t1_III_m 6061 4309
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g123_x3_III_m 3647 3543
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g139_x3_III_p 21536 21622
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g113_x3_III_m 17319 17260
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g116_x3_III_m 7960 7871
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g95_x3_III_m 17319 17239
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g88_x3_III_m 4616 4486
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g114_x3_III_m 6022 5175
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g116_x3_III_m 8322 8006
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g156_x3_III_p 19773 21025
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g145_x3_III_p 15450 15572
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g179_x3_III_p 24483 24766
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g106_x3_III_m 3881 3594
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g139_x3_III_m 8325 8024
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g82_x3_III_p 19692 20980
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g26n11_x3_III_p 14303 15584
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g128_x3_III_m 10222 10041
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g120_x3_III_m 5205 5172
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g136_x3_III_m 4616 4474
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g105_x3_III_m 6061 3591
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g112_x3_III_m 18006 17896
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g57n11_x3_III_p 14303 15503
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g69_x3_III_p 19773 21004
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g91_x3_III_m 6020 5164
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48n11_x3_III_m 5205 4809
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g108_x3_III_m 3080 2178
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g114_x3_III_m 10222 9900
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g66_x3_III_p 19692 21406
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g158_x3_III_m 3890 3838
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g137_x3_III_m 4616 4309
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g197_x3_III_p 21536 21640
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g212_x3_III_m 12961 12902
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g116_x3_III_m 17403 17236
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g61n11_x3_III_m 18820 17956
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g189_x3_III_p 16047 16218
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g157n11_x3_III_m 6061 3522
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g24n11_x3_III_p 14303 15506
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g83_x3_III_m 8352 7685
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g153_x3_III_m 22313 22044
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g27n11_x3_III_p 14303 15617
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g56e2k57_x3_III_m 18820 18737
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g202_x3_III_p 21536 21724
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g100_x3_III_m 17319 17254
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g53n11_x3_III_m 18820 17878
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g102n11_x3_III_m 3920 3390
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g165_x3_III_m 6025 5979
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g55_x3_III_p 19692 21046
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g90_x3_III_m 8352 8060
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g92_x3_III_m 5205 4959
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g82_x3_III_m 10225 10032
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g118_x3_III_m 3041 2202
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g99n11_x3_III_m 17319 17274
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g72_x3_III_p 24483 24781
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g155_x3_III_p 16192 16269
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g67_x3t1_III_m 4616 4309
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g89_x3_III_p 21047 21655
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g57n11_x3_III_m 6061 5175
        ZC47.gc1 1531 226
        ZC47.gc2 3920 2079
        ZC47.gc3 6133 4306
        ZC47.gc4 8352 6728
        ZC47.gc5 10264 9190
        ZC47.gc6 14303 16401
        ZC47.gc7 18820 17077
        ZC47.gc8 19692 21727
        ZC47.gc9 23199 21975
        ZC47.gc10 24423 25614
        ContigIII.elegans.jigsaw.228.mRNA228 13871 10404
        ContigIII.elegans.jigsaw.232.mRNA232 23263 21928
        ContigIII.elegans.jigsaw.224.mRNA224 3973 1978
        ContigIII.elegans.jigsaw.231.mRNA231 19534 21910
        ContigIII.elegans.jigsaw.233.mRNA233 24364 25757
        ContigIII.elegans.jigsaw.225.mRNA225 6133 4237
        ContigIII.elegans.jigsaw.227.mRNA227 10303 9022
        ContigIII.elegans.jigsaw.230.mRNA230 19163 17371
        ContigIII.elegans.jigsaw.223.mRNA223 1563 305
        ContigIII.elegans.jigsaw.226.mRNA226 8383 6664
        ContigIII.elegans.jigsaw.229.mRNA229 14274 16760
        AG1201_ZC47.7.T1 1531 349
        AG1201_ZC47.5.T3 3920 2079
        AG1201_ZC47.5.T4 3924 2079
        AG1201_ZC47.5.T5 6061 2079
        AG1201_ZC47.5.T1 6061 4457
        AG1201_ZC47.3.T1 8352 7220
        AG1201_ZC47.3.T3 8352 7943
        AG1201_ZC47.3.T2 8352 7946
        AG1201_ZC47.4.T1 10264 9190
        AG1201_ZC47.11.T1p 11970 11693
        AG1201_ZC47.11.T2p 12036 11971
        AG1201_ZC47.8.T1p 13293 13096
        AG1201_ZC47.9.T2p 14303 15620
        AG1201_ZC47.9.T1p 15645 16401
        AG1201_ZC47.13.T5 17502 17077
        AG1201_ZC47.13.T8 18743 17077
        AG1201_ZC47.13.T7 18820 17077
        AG1201_RIT3P.696.T1 17326 17592
        AG1201_ZC47.13.T3 18820 17503
        AG1201_ZC47.13.T4 22745 17503
        AG1201_ZC47.14.T2 19692 21061
        AG1201_ZC47.14.T1 19692 21727
        AG1201_ZC47.13.T2 23284 21975
        AG1201_ZC47.13.T1 22745 22455
        AG1201_ZC47.12.T1p 24423 25183
      Transcript: ZC47.13b 23199 21975
        ZC47.13a.1 23199 21975
        ZC47.14.1 19672 21816
        ZC47.3.1 8376 7150
        ZC47.3.2 8381 6669
        ZC47.4.1 10289 9101
        ZC47.5.1 6104 4244
        ZC47.6.1 3932 1975
        ZC47.7.1 1575 299
      Pseudogene: ZC47.8 13667 12636
        ZC47.9 14303 16401
        ZC47.10 18820 17077
        ZC47.11 12036 10925
        ZC47.11:wp18 11785 10925
        ZC47.12 24423 25614
      PCR_product (37)
      Allele (1324)
      Oligo_set: Aff_ZC47.10 17862 17077
        Aff_ZC47.12 24956 25614
        Aff_ZC47.13 22616 21975
        Aff_ZC47.14 21074 21727
        Aff_ZC47.3A 7867 7220
        Aff_ZC47.3B 7867 6728
        Aff_ZC47.4 9842 9190
        Aff_ZC47.5 4967 4306
        Aff_ZC47.6 3413 2079
        Aff_ZC47.9 15528 16401
      Feature_object (196)
      Feature_data (6)
      Homol_data: ZC47:RNAi 1 26347
        ZC47:SAGE 1 26347
        ZC47:Mass-spec 1 26347
        ZC47:TEC_RED 1 26347
        ZC47:wublastx_brenneri 1 26347
        ZC47:wublastx_briggsae 1 26347
        ZC47:wublastx_remanei 1 26347
        ZC47:wublastx_worm 1 26347
        ZC47:RepeatMasker 1 26347
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: Y119D3A 26342
    Overlap_left: Y119D3B
    Clone_left_end: ZC47 1
    Clone_right_end: ZC47 26347
      Y119D3 109
  DB_info: Database: EMBL NDB_AC FO081832
        NDB_ID _AC199172
        NDB_SV FO081832.1
    Secondary_accession: AC199172
      Z81141
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: McMurray AA
    From_laboratory: RW
    Date_directory: 001206
    Species: Caenorhabditis elegans
  Visible: Clone: ZC47
    Remark: [rd 990709] in St Louis contig on III
      [dl 001208] Truncated left end by 7.2 kb to accomodate repetitive insertion in Y119D3B. The genes ZC47.1, ZC47.2 and ZC47.15 reside on Y119D3B
      [20070222 db] This clone was originally sequenced by the Sanger Center; ownership officially transferred to GSC
  Properties: Genomic_canonical
    Checksum: MD5: 4b8aae4522a2aa017499625017477cc7
    Status: Finished: 28 May 1996 00:00:00
      Submitted: 21 Oct 1996 00:00:00
      Annotated: 23 Oct 1996 00:00:00
  Map: Sequence-III
  Interpolated_map_position: III -22.5584
  Assembly_tags: Finished Left 4 1 ZC47
    Clone right end 104 109 Y119D3
      26347 26342 ZC47
    annotation 18488 18485 not sure if this is TTGG or TTTG
    Finished Right 26347 26342 ZC47
  Method: Genomic_canonical