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WormBase Tree Display for Variation: WBVar00146393

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Name Class

WBVar00146393EvidencePaper_evidenceWBPaper00005596
NamePublic_namegv6
Other_nameCE33125:p.Met116IlefsTer4
H15N14.1d.1:c.347_1634del
H15N14.1c.1:c.545_1847del
H15N14.1e.1:c.347_1634del
CE33126:p.Met116IlefsTer4
CE32459:p.Met182IlefsTer4
HGVSgCHROMOSOME_I:g.7774707_7776266del
Sequence_detailsSMapS_parentSequenceH15N14
Flanking_sequencesagtttgattcgactgggaaaagcccagcgatcgtgctatgaccgagtcaaaggtttctcc
Mapping_targetH15N14
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000434
WBStrain00000436
WBStrain00000441
WBStrain00000442
LaboratoryKM
StatusLive
AffectsGeneWBGene00000079
TranscriptH15N14.1d.1 (11)
H15N14.1c.1 (11)
H15N14.1e.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant
VEP_impactHIGH
HGVScH15N14.1e.1:c.347_1634del
HGVSpCE33126:p.Met116IlefsTer4
cDNA_position367-1654
CDS_position347-1634
Protein_position116-545
Intron_number5-9/13
Exon_number5-10/14
Codon_changeaTGTTGCTTCATGAGCTGTTCAAGGATGTTTCTGAAGAGTAAGTTATTGAATTTATTAGAAAGGCAATCAAATTATTGAACTTTTTCAGGTACACTGAGGTTGAGGGCGTTCCGAAAAAGTATTGCTGCACATTGAAAGTAAACGGACGCACTTTTCAAATGGAATCAGTCAACAAGAAAGCAGCGAAACAAAAATGTTCGGAACTTGTTGTTCGCGATCTTCGTCCGGATGTTCATGTAACACCATTTGAAGAAGGTGTAGCAGCAAAAGCAGCGGCTCCAGTGAAAAAGGAAATCGATGCCGCTTCTGGAAATGGGCAGAACAACAAGAGAAATGTACGTTCGAACTACAATTGGTTTTAATAAGTTTTATATTAGTTGCTTCAGGCTGATGCTATTTCAAATCAACCGACACCGAAAAAGGTCTCCGCTGTTAAGAAAGCAAAGGTAAAATTCAAATTTTCAAAAGCTGTACTTATAAATTCTCAAGCTCCAGTTGACACCTGTTGAATCTGCGCTTTCGTTGCTAGATCTAATGCAAAAAATAATTGCTGAGTCTGCCGAGAAGTATTCACCAGTTTTCGAAGCTTCGGAGGTTCCAAAAGATCCAGAGATTCCCGAAGTCGAAGTCAAAAAAGAAGAAGTGGATACAAATGGAGAAAACGTTGCCAATGAAAAGAAGAGTGGTTGGCGCAAAAATGAGACCATGCATAATGTCACTTTGAAATTCGTGGAGCAAAATAAACAATATACAAAGATGGGACCAAGTCGTGGAGTTTTGAAAGATATGGTCATTCGTGAAGCTCTTCGTGACTTGTTCAACGTGTCACATGCCGACATCACCACTGTTGCCCGTAGACATGCAAGTAATCGTCTTGGACACGATACGACAATCCTTCAATGTCTCAATACCATTTGCTCAATTTTAAATTGCACTCTTACTATTGAATGTGAGCCAGCAGAAGACAGACCACTTGGTATCGGAAGAGCATATTTCATGGCAAAATGCACAATTATTGATCACAATGGTATTTTTACTAGAATCTCAGATTTAGAACAGTTTTTCAATTTTTTCAGAGAATGATTTGAAATTTGAAGTCAAGTCCTCATCACTCGCTTCCAAAGCAATGGCCAAAGACTGGGTCGCGCAAGAAACACTAAAAAACTATTTTGCAATAGATCCATCTTCCTGTGTGAAAACAGATGCTGTCAGCAGTCAGGGACCGTGTGCTCTTCTCCACGCGATGCTCAACAAGCAGACGAAACAGAAGTGCAAGATTGCCTATGAATTCAAGGACAATGTACCTCCAGTTGCTGGACAGGCTACAACGACATTCTAGTAAGTGAAGTACAATTTCAGAATCCTTTTTTGAAAATATTTTATGAGGCTGTTTTAATTGAAAATTTTCAGTTGTGAATGCGTAATCGATGAAACCGATCGGTACATTGGCGTTGGTCGTTCGAAAAAACTGGCTAAAAGTGAAGCGGCAATGCAAGCTCTGAAGAAGCTTTTCAAAATTGACTATGATCCAGCCGGCAACTATCCACTTGCATTGACAAGt/at
Amino_acid_changeMLLHELFKDVSEE*VIEFIRKAIKLLNFFRYTEVEGVPKKYCCTLKVNGRTFQMESVNKKAAKQKCSELVVRDLRPDVHVTPFEEGVAAKAAAPVKKEIDAASGNGQNNKRNVRSNYNWF**VLY*LLQADAISNQPTPKKVSAVKKAKVKFKFSKAVLINSQAPVDTC*ICAFVARSNAKNNC*VCREVFTSFRSFGGSKRSRDSRSRSQKRRSGYKWRKRCQ*KEEWLAQK*DHA*CHFEIRGAK*TIYKDGTKSWSFERYGHS*SSS*LVQRVTCRHHHCCP*TCK*SSWTRYDNPSMSQYHLLNFKLHSYY*M*ASRRQTTWYRKSIFHGKMHNY*SQWYFY*NLRFRTVFQFFQRMI*NLKSSPHHSLPKQWPKTGSRKKH*KTILQ*IHLPV*KQMLSAVRDRVLFSTRCSTSRRNRSARLPMNSRTMYLQLLDRLQRHSSK*STISESFFENIL*GCFN*KFSVVNA*SMKPIGTLALVVRKNWLKVKRQCKL*RSFSKLTMIQPATIHLH*QX/X
GeneticsInterpolated_map_positionI2.3549
Mapping_dataIn_multi_point4145
DescriptionPhenotypeWBPhenotype:0000007Paper_evidenceWBPaper00056617
Curator_confirmedWBPerson11281
Phenotype_assayGenotypeunc-22(RNAi)Paper_evidenceWBPaper00056617
Curator_confirmedWBPerson11281
WBPhenotype:0000699Paper_evidenceWBPaper00056617
Curator_confirmedWBPerson11281
WBPhenotype:0001171Paper_evidenceWBPaper00056617
Curator_confirmedWBPerson11281
ReferenceWBPaper00017773
WBPaper00026535
WBPaper00056617
MethodDeletion_allele