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WormBase Tree Display for Variation: WBVar00089736

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Name Class

WBVar00089736EvidencePaper_evidenceWBPaper00032289
NamePublic_namen765
Other_nameCE15381:p.Pro208LysfsTer16
ZK662.4.2:c.622_812del
ZK662.4.1:c.622_812del
HGVSgCHROMOSOME_X:g.15727663_15727853del
Sequence_detailsSMapS_parentSequenceZK678
Flanking_sequencesTCAAATGTCAAGTTTACGAACATTGTGTGTAAGGTAAATTTAGCGTTTTTAACCTTTATA
Mapping_targetZK678
Type_of_mutationInsertion
Deletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (179)
LaboratoryMT
NM
CX
StatusLive
AffectsGeneWBGene00003004
WBGene00023498
WBGene00023497
TranscriptZK662.4.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScZK662.4.1:c.622_812del
HGVSpCE15381:p.Pro208LysfsTer16
cDNA_position628-818
CDS_position622-812
Protein_position208-271
Exon_number4/10
Codon_changeCCAAACGAAGAGATTTGCAAGCTGGTTGAAGAGAGTGCAGTTGTCAAACGATACAACGTTTGCTTCTACAACTACGTTACCCGTTTTGTGGCCGATTTGATGGAAATTGAAGAGTTTTCCAGTGGGCTGACACAATTGCGAACATTTGTTCGTTATATGAAACAAAATTCGGATATGTATAGCAAATTTAGa/a
Amino_acid_changePNEEICKLVEESAVVKRYNVCFYNYVTRFVADLMEIEEFSSGLTQLRTFVRYMKQNSDMYSKFR/X
ZK662.4.2VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScZK662.4.2:c.622_812del
HGVSpCE15381:p.Pro208LysfsTer16
cDNA_position634-824
CDS_position622-812
Protein_position208-271
Exon_number4/11
Codon_changeCCAAACGAAGAGATTTGCAAGCTGGTTGAAGAGAGTGCAGTTGTCAAACGATACAACGTTTGCTTCTACAACTACGTTACCCGTTTTGTGGCCGATTTGATGGAAATTGAAGAGTTTTCCAGTGGGCTGACACAATTGCGAACATTTGTTCGTTATATGAAACAAAATTCGGATATGTATAGCAAATTTAGa/a
Amino_acid_changePNEEICKLVEESAVVKRYNVCFYNYVTRFVADLMEIEEFSSGLTQLRTFVRYMKQNSDMYSKFR/X
InteractorWBInteraction000051554
WBInteraction000051555
WBInteraction000051556
WBInteraction000051557
WBInteraction000051558
WBInteraction000051559
WBInteraction000051560
WBInteraction000051561
WBInteraction000051562
WBInteraction000051563
WBInteraction000051564
WBInteraction000051565
WBInteraction000051566
WBInteraction000051567
WBInteraction000051568
WBInteraction000051569
WBInteraction000051570
WBInteraction000051571
WBInteraction000051572
WBInteraction000051573
WBInteraction000051574
WBInteraction000051575
WBInteraction000051576
WBInteraction000051577
WBInteraction000051578
WBInteraction000051579
WBInteraction000051580
WBInteraction000051581
WBInteraction000051582
WBInteraction000051583
WBInteraction000051584
WBInteraction000051585
WBInteraction000051586
WBInteraction000051587
WBInteraction000051588
WBInteraction000051589
WBInteraction000051685
WBInteraction000051686
WBInteraction000051687
WBInteraction000051688
WBInteraction000051689
WBInteraction000051690
WBInteraction000051691
WBInteraction000051692
WBInteraction000051693
WBInteraction000051694
WBInteraction000051695
WBInteraction000051696
WBInteraction000052124
WBInteraction000500334
WBInteraction000500662
WBInteraction000500663
WBInteraction000502392
WBInteraction000519982
WBInteraction000519983
WBInteraction000519984
WBInteraction000519985
WBInteraction000523931
WBInteraction000524055
WBInteraction000524056
WBInteraction000524057
WBInteraction000524397
WBInteraction000524410
WBInteraction000524413
GeneticsInterpolated_map_positionX22.945
Mapping_dataIn_2_point4457
4458
7082
In_multi_point (19)
In_pos_neg_data4461
Description (2)
Reference (26)
RemarkManually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00023498 WBGene00003004 Genomic_neighbourhood
MethodDeletion_and_insertion_allele