WormBase Tree Display for Variation: WBVar00142924
expand all nodes | collapse all nodes | view schema
WBVar00142924 | Evidence | Paper_evidence | WBPaper00025184 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | e30 | |||||
Other_name (12) | |||||||
HGVSg | CHROMOSOME_V:g.11908351G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | R31 | |||
Flanking_sequences | caagaagcaggaagcactcagaaccgcatg | aacacactgtgtgaatacatcgaagcacgt | |||||
Mapping_target | R31 | ||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00025184 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (14) | |||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00004855 | |||||
Transcript | R31.1e.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1e.1:c.5889G>A | ||||||
HGVSp | CE52987:p.Trp1963Ter | ||||||
cDNA_position | 5889 | ||||||
CDS_position | 5889 | ||||||
Protein_position | 1963 | ||||||
Exon_number | 8/17 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R31.1a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1a.1:c.5889G>A | ||||||
HGVSp | CE41581:p.Trp1963Ter | ||||||
cDNA_position | 6004 | ||||||
CDS_position | 5889 | ||||||
Protein_position | 1963 | ||||||
Exon_number | 9/20 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R31.1c.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1c.1:c.5331G>A | ||||||
HGVSp | CE46009:p.Trp1777Ter | ||||||
cDNA_position | 5331 | ||||||
CDS_position | 5331 | ||||||
Protein_position | 1777 | ||||||
Exon_number | 5/15 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R31.1b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1b.1:c.5580G>A | ||||||
HGVSp | CE27773:p.Trp1860Ter | ||||||
cDNA_position | 5580 | ||||||
CDS_position | 5580 | ||||||
Protein_position | 1860 | ||||||
Exon_number | 7/17 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R31.1d.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1d.1:c.5580G>A | ||||||
HGVSp | CE46252:p.Trp1860Ter | ||||||
cDNA_position | 5822 | ||||||
CDS_position | 5580 | ||||||
Protein_position | 1860 | ||||||
Exon_number | 8/18 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R31.1f.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R31.1f.1:c.5331G>A | ||||||
HGVSp | CE53064:p.Trp1777Ter | ||||||
cDNA_position | 5331 | ||||||
CDS_position | 5331 | ||||||
Protein_position | 1777 | ||||||
Exon_number | 5/14 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
Interactor | WBInteraction000500863 | ||||||
Genetics | Interpolated_map_position | V | 3.53978 | ||||
Mapping_data | In_2_point (12) | ||||||
In_multi_point (74) | |||||||
In_pos_neg_data | 296 | ||||||
852 | |||||||
867 | |||||||
1742 | |||||||
1754 | |||||||
1815 | |||||||
2130 | |||||||
3408 | |||||||
6770 | |||||||
6869 | |||||||
Description (2) | |||||||
Reference (15) | |||||||
Method | Substitution_allele |