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WormBase Tree Display for Variation: WBVar00275093

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Name Class

WBVar00275093NamePublic_namevs105
Other_name (12)
HGVSgCHROMOSOME_V:g.9609233_9609313del
Sequence_detailsSMapS_parentSequenceK09G1
Flanking_sequencestaataaaaaagtatattttcttttcaggtagtggccatcatagttatgccatacgcggtt
Mapping_targetK09G1
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (12)
LaboratoryLX
CF
IV
StatusLive
AffectsGeneWBGene00001053
TranscriptK09G1.4e.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4e.1:c.175_255del
HGVSpCE53007:p.Ile59_Leu85del
cDNA_position175-255
CDS_position175-255
Protein_position59-85
Exon_number2/16
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
K09G1.4f.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4f.1:c.175_255del
HGVSpCE53034:p.Ile59_Leu85del
cDNA_position175-255
CDS_position175-255
Protein_position59-85
Exon_number2/15
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
K09G1.4a.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4a.1:c.175_255del
HGVSpCE35993:p.Ile59_Leu85del
cDNA_position193-273
CDS_position175-255
Protein_position59-85
Exon_number3/16
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
K09G1.4g.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4g.1:c.175_255del
HGVSpCE52992:p.Ile59_Leu85del
cDNA_position191-271
CDS_position175-255
Protein_position59-85
Exon_number3/16
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
K09G1.4d.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4d.1:c.175_255del
HGVSpCE46806:p.Ile59_Leu85del
cDNA_position194-274
CDS_position175-255
Protein_position59-85
Exon_number3/17
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
K09G1.4c.1VEP_consequenceinframe_deletion
VEP_impactMODERATE
HGVScK09G1.4c.1:c.175_255del
HGVSpCE45633:p.Ile59_Leu85del
cDNA_position199-279
CDS_position175-255
Protein_position59-85
Exon_number3/17
Codon_changeATAATATCAGTACTCCGGTACCGAGCACTGCAATCAGCCATCAATTTCCTTATCCTAGGCCTGGCTGTGGCGGATCTTTTG/-
Amino_acid_changeIISVLRYRALQSAINFLILGLAVADLL/-
InteractorWBInteraction000518035
GeneticsInterpolated_map_positionV2.05496
DescriptionPhenotypeWBPhenotype:0000525Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
RemarkWild-type worms climb the nicotine gradient, that is worms approach the nicotine spot in a time- and concentration dependent manner. These mutants have reduced nicotine approach behavior.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
Phenotype_assayTreatmentWorms placed on a nicotine gradient. The nicotine gradient was formed by adding 10 uL of 50 mm nicotine tartrate salt solution in water and allowed 90 minutes to diffuse.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
WBPhenotype:0000542Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001444Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals showed defects in gustatory plasticity.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Phenotype_assayTreatmentAnimals were tested for response to 25 mM NaCl after various pre-treatments: a 15-min wash in CTX buffer with or without 100 mM NaCl (liquid), or 30 min on a CTX plate with or without 100 mM NaCl, and in the presence or absence of bacteria, 500 mM glycerol, or 3 uL of benzaldehyde.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
WBPhenotype:0001573Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
RemarkWild-type worms climb the nicotine gradient, that is worms approach the nicotine spot in a time- and concentration dependent manner. These mutants have reduced nicotine approach behavior.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
Phenotype_assayTreatmentWorms placed on a nicotine gradient. The nicotine gradient was formed by adding 10 uL of 50 mm nicotine tartrate salt solution in water and allowed 90 minutes to diffuse.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
WBPhenotype:0001639Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002286Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002289Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002293Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002300Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002302Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002310Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002312Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002325Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002344Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002347Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0001006Paper_evidenceWBPaper00044757
Curator_confirmedWBPerson2987
RemarkFigure S2CPaper_evidenceWBPaper00044757
Curator_confirmedWBPerson2987
WBPhenotype:0001012Paper_evidenceWBPaper00032196
Curator_confirmedWBPerson712
RemarkAnimals were as susceptible to infection by P. aeruginosa as N2 animals.Paper_evidenceWBPaper00032196
Curator_confirmedWBPerson712
Phenotype_assayStrainWBStrain00026373Paper_evidenceWBPaper00032196
Curator_confirmedWBPerson712
WBPhenotype:0001101Paper_evidenceWBPaper00038382
Curator_confirmedWBPerson712
RemarkNo effects on clozapine-induced egg laying were observed.Paper_evidenceWBPaper00038382
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003634Paper_evidenceWBPaper00038382
Curator_confirmedWBPerson712
WBPhenotype:0001182Paper_evidenceWBPaper00044757
Curator_confirmedWBPerson2987
RemarkFigure 2APaper_evidenceWBPaper00044757
Curator_confirmedWBPerson2987
WBPhenotype:0001817Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
RemarkAnimals exhibited enhanced-gustatory plasticity, i.e. strong avoidance to NaCl after starvation, similar to that observed for wild type.Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00003571Paper_evidenceWBPaper00032335
Curator_confirmedWBPerson712
Disease_infoModels_diseaseDOID:0050742
Modifies_diseaseDOID:680
Models_disease_in_annotationWBDOannot00000688
Modifies_disease_in_annotationWBDOannot00000764
WBDOannot00000766
WBDOannot00000767
ReferenceWBPaper00038382
WBPaper00041959
WBPaper00043908
WBPaper00032196
WBPaper00032335
WBPaper00044757
WBPaper00065340
WBPaper00065715
RemarkThis deletion removes most of the first and second transmembrane domain and the splice acceptor for exon 2.Paper_evidenceWBPaper00024390
MethodDeletion_allele